Sequence
atgc intronic sequence ATGC exonic sequence...acaatattgttggtttggcttccagactataaatacataacttcatgctgaatgtaatattcatggtaacattttttttttttttttaatttttcaacagCTTTTCGACCTTGCAACTTCCTGTAAGGTTGTCCTTTGCTGTCGTGTTGCACCCTTGCAAAAAGCTGGAATTGTTGATCTAATTAAGAGTCGTACTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G34610.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------acaatattgttg-gtttggcttccagactataaatacataac--ttcatgctgaatgtaata--------ttcatggtaa-cattttttttttttttttaatttttcaacagCTTTTCGACCTTGCAACTTCCTGTAAGGTTGTCCTTTGCTGTCGTGTTGCACCCTTGCAAAAAGCTGGAATTGTTGATCTAATTAAGAGTCGTACTGATG
| |||| | || || | | ||| | ||| || | || |||| ||||||| || |||| | |||| || |||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||||| ||||| ||||| |||||||| || || || || || ||||
gcaagattatctttcctcatttgaagttttcatttggaatatttatgtatgttggaactgttaagcttaatttatattaggtgcatatacaactgtttagattggtatcaataagttcaacttcatggaaaatatttactgttttcccttttcctttcaacagCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTATGCTGCCGTGTTGCACCCTTGCAGAAAGCAGGAATCGTTGATCTGATAAAAAGCCGCACAGATG
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G44550.1 (Glycine max), 3'ss of exon 6
------------------------------------------------------------------------------acaatattgttggtttggcttccagactataaatacataacttcat-gctgaatgtaatattcatggtaa-cattttttttttttttttaatttttcaacagCTTTTCGACCTTGCAACTTCCTGTAAGGTTGTCCTTTGCTGTCGTGTTGCACCCTTGCAAAAAGCTGGAATTGTTGATCTAATTAAGAGTCGTACTGATG
|| | ||| | | || | | || | | | | | | | ||| || || | ||||| |||| | ||| ||| |||||||||||||||||||||||||||||||||| |||||| || || ||||| ||||||||||||||||| || |||||||||||| | || ||||| || || ||||
gtaaaattgtccttcctcatttgaatttgttgtttgaaatatttatgcatattgaacatctaaaacttgctttttctctcagtgatgtag--taggttaatataccactgctttagattggagttgttaaataaaac-ttaacggtaaatatttatcagtttcctttttcctttcaacagCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTGTGTTGTCGAGTTGCACCCTTGCAAAAGGCAGGAATTGTTGATTTGATAAAGAGCCGCACAGATG
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G41040.1 (Glycine max), 3'ss of exon 7
----------------------------------------------------------------acaatattgttggtttggc----ttccagactataaatacataacttcatgctgaa--tgtaatattcatggtaacattttttttttttttttaatttttcaacagCTTTTCGACCTTGCAACTTCCTGTAAGGTTGTCCTTTGCTGTCGTGTTGCACCCTTGCAAAAAGCTGGAATTGTTGATCTAATTAAGAGTCGTACTGATG
|| | || || | | | || || | || ||| | || | ||| | || | ||| | ||| |||| |||||||||||||||||||||||||||||||||| |||||| || || ||||| ||||||||||||||||| || |||||||||||| | || ||||| || || ||||
gtaaagttgtccttcctcgtttgaatttgttgtttgaaatatttatgcgtgttgaacatctaaaactttctttttctctaagtgatgtagtaggttaatataccactgctttagattggagttgttaaataaaacttaatggtaccaatttccttttt-cctttcaacagCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTGTGTTGTCGAGTTGCACCCTTGCAAAAGGCAGGAATTGTTGATTTGATAAAGAGCCGCACAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctgaatgtaatattcatggtaacattttttttttttttttaatttttcaacagCTTTTCGACCTTGCAACTTCCTGTAAGGTTGTCCTTTGCTGTCGTGTTGCACCCTTGCAAAAAGCTGGAATTGTTGATCTAATTAAGAGTCGTACTGATG
catttttttttttttt CT-rich tract
taatattcatggtaac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acaatattgttggtttggcttccagactataaatacataacttcatgctgaatgtaatattcatggtaacattttttttttttttttaatttttcaacagCTTTTCGACCTTGCAACTTCCTGTAAGGTTGTCCTTTGCTGTCGTGTTGCACCCTTGCAAAAAGCTGGAATTGTTGATCTAATTAAGAGTCGTACTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - -tgttggt
- - - - - - - - -gcttcca
- - - - - - - - - - - - - - - aaataca
- - - - - - - - - - - - - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgg