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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagagactatctatgactaatactcttgtatattgtcttctcagattttgctgcttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcagATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAG

Basic information

species Vitis vinifera
transcript Vv08s0058g01360.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os12g02390.1 (Oryza sativa), 3'ss of exon 3
gtgaaagagactatctatgactaatactcttgtatattgtcttctcagattttgctgcttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcagATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAG
                             | ||| ||   | |   | | ||| ||  |    |  |  |  |  | ||  ||||  ||    |    | |||    |  |||||||||| ||||| ||||| ||||| || || || || || |||||||| ||||||||||| |||||||
---------------------------gttagtacata--catgctataattttctattca--tacaactggtaatctg-aatttaacaccacccaccatttta---tatagATTGGCAAGGGCTCTCGTGGTGATGTTACCATCTTACCGACTCTTGTAATCAACAATAGACAATACAGAG

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os11g02464.1 (Oryza sativa), 3'ss of exon 3
gtgaaagagactatctatgactaatactcttgtatattgtcttctcagattttgctgcttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcagATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAG
                           |  |  |||    | |   | | ||| ||  |    |  |  |  |  | ||  ||||  |||   |    | |||  |    |||||||||| ||||| ||||| ||||| || || || || || |||||||| ||||||||||| |||||||
-------------------------gttactacata----catgctataattttctattca--tacaactggtaatctg-aatttagcatcacccaccattttatgt---agATTGGCAAGGGCTCTCGTGGTGATGTTACCATCTTACCGACTCTTGTAATCAACAATAGACAATACAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405593|gb|CF211220.1|CF211220
EST:     GCTGAACAGGATGCACAG                         ATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATA
genomic: GCTGAACAGGATGCACAGgtgaaagaga ... ttggcttcagATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcagATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAG
        tattttattgtttgtg  TA-rich tract