Sequence
atgc intronic sequence ATGC exonic sequencegtcagttggtagtccagtaactcgtatcttgttccttcttcccaactcacatcactttttttcttcaactcatgctattgttgaaaagtatgattcaattggtgtttccagCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 3'ss of exon 2
gtcagttggtagtccagtaactcgtatcttgttccttcttcccaactcacatcactttttttct-tcaactcatgctattgttgaaaagtatgattcaattggtgtttccagCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACC
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--------------------gtgagatggtgacctatgctgtgaaatgtatgcacatttttggtgctagattgttctgcaacagtaac-tctaaagaacttcactattccagCGTCTCCATTGTGGATGTATTGCTTCGAAGAACTCCTTTGATCTACTTGATAGCGGTGGAGTTCAATGTGTCACTTGCATTAAAAATTCAGCAGTTCAAT
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G32810.1 (Glycine max), 3'ss of exon 2
-----------------------------gtcagttggtagtcca---gtaactcgtatcttgttccttcttcccaactcacatcactttttttcttca-actcatgctattgttgaaaagtatgattcaattggtgtttccagCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACC
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gtagagttaaaaaagatatatgtattttggtacattggtagagtatatataagactggcataactctttttaccccaattttggtatttccatgttctacattaaggttaatgatcctatatgtt-ttgtcttattatctgcagCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGT----------------------------------------
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G04330.1 (Glycine max), 3'ss of exon 2
---------------------gtcagttggtagtccagtaactcgtat------cttgttccttcttcccaactcacatcactttttttcttcaactcatgctattgttgaaaagtatgattcaattggtgtttccagCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACC
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gtagagttaaaaaatatatacgtattttggtacactggtagagtatatagaagactagcataactctttttaccccaattttggtatttccatgttctatgttaagcttaatgatcctatatgttttattatctgcagCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGT---------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttcttcaactcatgctattgttgaaaagtatgattcaattggtgtttccagCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACC
tgtttcc CT-rich tract
aaaagtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagttggtagtccagtaactcgtatcttgttccttcttcccaactcacatcactttttttcttcaactcatgctattgttgaaaagtatgattcaattggtgtttccagCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT