Sequence
atgc intronic sequence ATGC exonic sequence...tttccctcagatcactgtcccaattctgtatattaggattttttttttccagtggttgttgttcttgttgtgtactgagaacttccctgtgtgtttacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAGGATTTTAGTGCAAAGCTTTCGGGATATGGTTGCGTTGGCCACATTCCAGAAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g60700.2 (Oryza sativa), 3'ss of exon 3
--------------------tttccctcagatcactgtc--ccaattctgtatattagg-attttttttttccagtggttgttg-ttcttg---ttgtgtactgagaacttccctgtgtgtt--------tacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAGGATTTTAGTGCAAAGCTTTCGGGATATGGTTGCGTTGGCCACATTCCAGAAGCAG
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gttactgcttctaaactttttctttttgacattaccaataagtgaatatttattttacctagttatatagtacattggttgatggtttttgaccttgtggtttaaactcttattcatatgttattttttttacagGCCATGTACAATGACTTCTCAACCTCAAACATCCAAATTGACAAAGATTTCACTGCAAAGCTATCAGGATATGGATGTGTTGGATTCAATACCGAGGAGG
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G44630.1 (Glycine max), 3'ss of exon 2
------------------------tttccctcagatcactgtcccaattctgtatattaggattttttttttccagtggttgttgttcttgttgtgtactgagaacttccctgtgtgtttacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAGGATTTTAGTGCAAAGCTTTCGGGATATGGTTGCGTTGGCCACATTCCAGAAGCAG-
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tacaactataataacactttgttttgtttttcatagtatggagcgaatgatttcaagtatgttatgattattaggttaattatacactttatctt-tgctgacatccttctt-tctgcttgtaggCTATGTATAATGAGTTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGCGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCCGAAGAAGA
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G41160.1 (Glycine max), 3'ss of exon 3
---tttccctcagatcactgtcccaattctgtatattaggattttttttttccagtggttgttgttcttgttgtg--tactgagaacttccctgtgtgtttacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAGGATTTTAGTGCAAAGCTTTCGGGATATGGTTGCGTTGGCCACATTCCAGAAGCAG
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atttgtttttcgtagtatggagtgaatg----atttcaagatgttatgattattaggttaactacacatgttatctttgctgacatccttatttt-tgtctgcagGCAATGTATAATGAGTTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCCGAGGAAG
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G32800.1 (Glycine max), 3'ss of exon 4
tttccctcagatcactgtcccaattctgtatattaggattttttttttccagtg-gttgttgttcttgt-tgtgtactga--gaacttccctgtgtgtttacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAGGATTTTAGTGCAAAGCTTTCGGGATATGGTTGCGTTGGCCACATTCCAGAAGCAG
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----agatatttttctatgttcctttagtacattaaatattaatttaggttgtatattactacatttctatctttgctgatgaacctttatcaattaattgtagGCAATGTATAATGAATTTTCAGCAGCCAACATACAGATTGACGAAGATTTCAGTGCAAAGCTTTCTGGATATGGTTGTGTTGGACGTATTCCTGAGGAAG
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G04340.1 (Glycine max), 3'ss of exon 3
tttccctcagatcactgtcccaattctgtatattaggattttttttttccagtggttgttgttcttgttgtgtactga--gaacttccctgtgtgtttacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAGGATTTTAGTGCAAAGCTTTCGGGATATGGTTGCGTTGGCCACATTCCAGAAGCAG
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-tgatgagaagatatttttctatgttcctttagtac-attaaatattaatttaggttgtacatttctatccttgctgatggacctctatcaattgattgtagGCAATGTATAATGAATTTTCAGCAGCCAACATACAGATTGAAAAAGATTTCAATGCAAAGCTTTCTGGATATGGTTGTGCTGGACGTATTCCTGAGGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71878162|gb|DT027217.1|DT027217EST: TATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAG GCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAG
genomic: TATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgtaagctgaa ... gtgtttacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttccctcagatcactgtcccaattctgtatattaggattttttttttccagtggttgttgttcttgttgtgtactgagaacttccctgtgtgtttacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAGGATTTTAGTGCAAAGCTTTCGGGATATGGTTGCGTTGGCCACATTCCAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-ttccctc
- - - - - - - - gtcccaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttccct