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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgttcccattcaaattagacccttagaactgtaacacgccaaagaagaactaaactcatgactgtttgatcatcttcctcagGATCTCACACAATTGGACAAGCAAGGTGCACAAACTTCCGAGATCGGTTGTACAATGAAACCAACATAGATGCCTCATTCCAGTCGTCCTTGCAAGCCAA

Basic information

species Vitis vinifera
transcript Vv08s0058g00970.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363563|gb|EC927161.1|EC927161
EST:     TTCCTTCTCAAACAAAGGTTTCAGTGCCAATGAAATGGTGGCTCTCTCAG                         GATCTCACACAATTGGACAAGCAAGGTGCACAAGCTTCCGAGATCGGTTGT
genomic: TTCCTTCTCAAACAAAGGTTTCAGTGCCAATGAAATGGTGGCTCTCTCAGgtatatatgt ... tcttcctcagGATCTCACACAATTGGACAAGCAAGGTGCACAAACTTCCGAGATCGGTTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtaacacgccaaagaagaactaaactcatgactgtttgatcatcttcctcagGATCTCACACAATTGGACAAGCAAGGTGCACAAACTTCCGAGATCGGTTGTACAATGAAACCAACATAGATGCCTCATTCCAGTCGTCCTTGCAAGCCAA
                                          tcatcttcctc  CT-rich tract
                    aactaaa  TA-rich tract