1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggcaatgttttctctgaaacccaaatgaggatacaatttgggacctgcattgatcaagttttctatgcttttcgcatgtgttttttatggggccatcagACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGCTCGGACGGGGAAAAGTATGCAAGGGATGTCCAAGATCTCATCGACTTTG
species | Vitis vinifera |
transcript | Vv08s0058g00930.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAG ACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAEST: gi|71877180|gb|DT026235.1|DT026235
genomic: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAGgtatagtcct ... gggccatcagACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGA
EST: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAG ACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGCEST: gi|33407556|gb|CF213183.1|CF213183
genomic: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAGgtatagtcct ... gggccatcagACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGC
EST: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCATCCAG ACCGGAGTTCATCATGCCCTCAACCCEST: gi|33409685|gb|CF215312.1|CF215312
genomic: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAGgtatagtcct ... gggccatcagACCGGAGTTCATCATGCCCTCAACCC
EST: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAG ACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGCEST: gi|161721151|gb|FC071026.1|FC071026
genomic: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAGgtatagtcct ... gggccatcagACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGC
EST: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAG ACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGCEST: gi|110698597|gb|EE076279.1|EE076279
genomic: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAGgtatagtcct ... gggccatcagACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGC
EST: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAAT-CAACGTCATCCAG AACGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGC
genomic: GGACTATGGGGGCTACGGCCCAACGTGTCTGGAAATTCAACGTCGTCCAGgtatagtcct ... gggccatcagACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGC
ctgcattgatcaagttttctatgcttttcgcatgtgttttttatggggccatcagACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGCTCGGACGGGGAAAAGTATGCAAGGGATGTCCAAGATCTCATCGACTTTG
cattgat putative branch site (score: 4)
tgttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcaatgttttctctgaaacccaaatgaggatacaatttgggacctgcattgatcaagttttctatgcttttcgcatgtgttttttatggggccatcagACCGGAGTTCATCATGCCCTCAACCCGGACCCGTACAGAGGTATGTTTGGCTCGGACGGGGAAAAGTATGCAAGGGATGTCCAAGATCTCATCGACTTTG
- -caatgtt
- - - - - - - - -aaaccca
- - - - - - - - - - - - - - - gatacaa
- - - - - - - - - - - - - - - - - - - - - - cctgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt