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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcttctcttgaacttatggaaatggcactctttagatcaatatctattgttattactgaaaaccccttttctctattaattgggattaatcactgaagcctggtgaaagcatgtctttagtaccattgtatatctcgttttctgtctttatgcagAGTATATTAGTTGAACCAACAAGTGGTAATACAGGACTTGGTATTGCATTTGTTGCGGCCACTAAGGGATACAAACTTATAGTCACCATGCCTGCATCCA

Basic information

species Vitis vinifera
transcript Vv08s0056g00820.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g00820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G29740.1 (Glycine max), 3'ss of exon 3
gtaagcttcttctcttgaac-ttatggaaatgg-cactctttagatcaatatctattgttattactgaaaaccccttt---tctctattaattgggattaatcactgaagcctggtgaaagcat--gtctttagtaccattgtatatctcgttttctgtctttatgcagAGTATATTAGTTGAACCAACAAGTGGTAATACAGGACTTGGTATTGCATTTGTTGCGGCCACTAAGGGATACAAACTTATAGTCACCATGCCTGCATCCA
                | || | ||| | ||   |  | | ||||||||   | ||  ||  || |  | |   ||||     |    ||||      ||||   |    |    |  | ||||      || |        || ||  |   | |||| ||| ||||||  || || ||||||||||||| ||| |||||||||||||| ||||| |||||||| || || ||||| ||||||||||||||||| |||||||| || |
----------------gtacatcatgaatattttctgtgtatagatcaaatgcaatctttgctattccatatatctttaaacttactgtaatgttatgtaatagtttgtacaaaattgaggcattgaatcttggattttccttacattcctgatcctgtatttgtgcagACCATTTTGGTTGAACCAACAACTGGAAATACAGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCTA

upper sequence: Vv08s0056g00820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G00900.1 (Glycine max), 3'ss of exon 3
gtaagcttcttctcttgaacttatggaaatggcactctttagatcaatatctattgttattactgaaaaccccttttctctattaattgggattaatcactgaagcctggtgaaagcatgtctttagtaccattgtatatctcgttttctgtctttatgcagAGTATATTAGTTGAACCAACAAGTGGTAATACAGGACTTGGTATTGCATTTGTTGCGGCCACTAAGGGATACAAACTTATAGTCACCATGCCTGCATCCA
                                                             |   ||||     || || ||||     | | || |   |  |       |  |     ||| |  |    |  || ||  |   | |||| ||  ||||||  || || ||||||||||||| ||| ||||| |||||||| ||||| |||||||| || || ||||| ||||||||||||||||| ||||| || ||  
-------------------------------------------------------------aaaaaaaaaaaacttactgtattgtgatgtaatagtttgtacaaagccaaggtattgaatctctgattttctc-tacattcctgatcctgtattggtgcagACCATTTTGGTTGAACCAACAACTGGAAATACGGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCAGCTTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgaaagcatgtctttagtaccattgtatatctcgttttctgtctttatgcagAGTATATTAGTTGAACCAACAAGTGGTAATACAGGACTTGGTATTGCATTTGTTGCGGCCACTAAGGGATACAAACTTATAGTCACCATGCCTGCATCCA
                                tctcgttttctgtctt  CT-rich tract
                        attgtatat  TA-rich tract