1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgctcctattgatgatgagttgtgtaagtttgaaattttcacttcttctattggatactaagggctagtgactcagaatttgttccttgcaactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTGACCTTGGGCCAGTTGAGTCTGTTTTGGGGGAAGCAAAACAAGAGTATG
species | Vitis vinifera |
transcript | Vv08s0056g00620.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110698903|gb|EE076929.1|EE076929
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|30133266|gb|CB918605.1|CB918605
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110423860|gb|EC990211.1|EC990211
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110723106|gb|EE100040.1|EE100040
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|351023437|gb|FQ432820.1|FQ432820
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|294963783|gb|GW836633.1|GW836633
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAGGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110378220|gb|EC943340.1|EC943340
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|351013904|gb|FQ434056.1|FQ434056
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110376043|gb|EC941082.1|EC941082
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110411460|gb|EC977174.1|EC977174
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110702891|gb|EE079258.1|EE079258
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|351017341|gb|FQ435693.1|FQ435693
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|294966352|gb|GW837603.1|GW837603
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|349819240|gb|FQ412134.1|FQ412134
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110702889|gb|EE079256.1|EE079256
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|161718482|gb|FC066332.1|FC066332
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110687935|gb|EE065911.1|EE065911
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110411538|gb|EC977258.1|EC977258
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|77587268|gb|DV222769.1|DV222769
genomic: CTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110702890|gb|EE079257.1|EE079257
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|110362618|gb|EC926164.1|EC926164
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|71859327|gb|DT008382.1|DT008382
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTEST: gi|351015182|gb|FQ445466.1|FQ445466
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
cttctattggatactaagggctagtgactcagaatttgttccttgcaactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTGACCTTGGGCCAGTTGAGTCTGTTTTGGGGGAAGCAAAACAAGAGTATG
ttccttgc CT-rich tract
aatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctcctattgatgatgagttgtgtaagtttgaaattttcacttcttctattggatactaagggctagtgactcagaatttgttccttgcaactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATTGACCTTGGGCCAGTTGAGTCTGTTTTGGGGGAAGCAAAACAAGAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-tgctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccttg