Sequence
atgc intronic sequence ATGC exonic sequence...tcaattctagtgacattacatgaagttatattgttcttcttaattcctcatattgtttctgttaactcaagttgatgtggcctttccctgaggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G007283_T02 (Zea mays), 3'ss of exon 3
tcaattctagtgacattacatgaagttatattgttcttcttaattcctcatat---tgtttctgttaactcaagttgatgtggcctt---tccctgaggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTA
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----tgccagtg-cactatttttcttgat-tcattcgcaatgaaattttattcagacgacgagggaaaattccgttgaccagacatcttgtttttcatgttctcagAGACAGCTACACCATTACCCTGGGGTACTAGGATGTCAATCGCACTGGGAGCTGCTAAAGGGCTTGCTTGCCTCCACAATGCTCAAAGGCCTGTCATCTA
upper sequence: Vv08s0056g00150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G40650.1 (Glycine max), 3'ss of exon 3
----tcaattctagtgacattacatgaagttatattgttcttcttaattcctcatattgtttctgttaactcaagttgatgtggcctttccctgaggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTA
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ttgtgaaaaaaaaatgctaatgctgacagttatgaagctaagattttgttcttcgggtgttttt-tcaactt--gttgatatgacctttcc-tgatgcttccagAGGCAACTGTCCCTTTATCATGGGCTACAAGAATGATGATTGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCTGTAATCTA
upper sequence: Vv08s0056g00150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G45200.1 (Glycine max), 3'ss of exon 3
----tcaattctagtgacattacatgaagttatattgttctt-cttaattcctcatattgtttctgttaactcaagttgatgtggcctttccctgaggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTA
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ttgtgaaaaataaatgccaaagctgacagttatgaagctaagattttttttcttggggtgttttt-tcaactt--gttgatatgacttttcc-tgatgcttccaGAGGCAACTGTCCCTTTATCATGGGCTACAAGAATGATGATTGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCTGTAATCT-
upper sequence: Vv08s0056g00150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G01020.1 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------tcaattctagtgacattacatgaagttatattgttcttcttaat-tcctcata-ttgtttct-gttaactcaagttgatgtggcctttccctgaggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTA
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gtaatccccgcacccttctccattttttgaagtctctgttcattcctacatatacaagcttattctgccttttagtcttgtcatactcgtctcttatttaaccaagtcaccatgggctctctct-------tcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGCTGCGAAAGGCCTTGCTTTCCTCCACAATGCTGAAAGACCGGTTATTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351019747|gb|FQ439564.1|FQ439564EST: TGTGTACGAGTTTATGTTCCGAGGAAGCCTCGAAAATCACTTGTTTCGAA AAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTG
genomic: TGTGTACGAGTTTATGTTCCGAGGAAGCCTCGAAAATCACTTGTTTCGAAgtacgctccg ... aggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTG
EST:
gi|110696363|gb|EE072413.1|EE072413EST: CTTGTTTCGAA AAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTG
genomic: CTTGTTTCGAAgtacgctccg ... aggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctcatattgtttctgttaactcaagttgatgtggcctttccctgaggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTA
tattgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaattctagtgacattacatgaagttatattgttcttcttaattcctcatattgtttctgttaactcaagttgatgtggcctttccctgaggcattcagAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - catgaag
- - - - - - - - - - - - - - - - - - - - - - tcctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtg