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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtccctcttagtgaaaataaaaatatatttctgatgctggattcaatttaactgttggcattctgacatgcaatttcttgtaacaattaacagTTTTAGTGCCATTGCAAGCTTCTGTGGCATATCCTTCTTCATTGCATTCCCTTGTGCCTGTATATTCTCCATGGGATGAGACTTCCATGCTTATAAACAC

Basic information

species Vitis vinifera
transcript Vv08s0040g03220.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349821355|gb|FQ410976.1|FQ410976
EST:     TACCCACAAAAGGCACCAACAAATG                         TTTTAGTGCCATTGCAAGCGTCTGTGGCATATCCTCCTTCATTGCATTCCC
genomic: TACCCACAAAAGGCACCAACAAATGgtttgtccct ... caattaacagTTTTAGTGCCATTGCAAGCTTCTGTGGCATATCCTTCTTCATTGCATTCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattcaatttaactgttggcattctgacatgcaatttcttgtaacaattaacagTTTTAGTGCCATTGCAAGCTTCTGTGGCATATCCTTCTTCATTGCATTCCCTTGTGCCTGTATATTCTCCATGGGATGAGACTTCCATGCTTATAAACAC
                                       ttgtaac  putative branch site (score: 2)
                                          taacaattaa  TA-rich tract