1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagaactgataatttcttaacaaatgtttatgctttttgttgtctgttaataggttctgtatgcctgtggcatttttgtttcaaatgtttaaatacttgaactgattagGTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAATGGATTATCATAGAGGTGCTGAAGTTGAG
species | Vitis vinifera |
transcript | Vv08s0040g02710.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTGAGCACCCCCAGAAGGAGACCTATTGGGGAAACGTGAATCCAATTG GTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAAEST: gi|110387086|gb|EC951729.1|EC951729
genomic: CCTTGAGCACCCCCAGAAGGAGACCTATTGGGGAAACGTGAATCCAATTGgtgagaactg ... aactgattagGTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAA
EST: CCTTGAGCACCCCCAGAAGGAGACCTATTGGGGAAACGTGAATCCAATTG GTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAAEST: gi|22010887|gb|BQ795921.1|BQ795921
genomic: CCTTGAGCACCCCCAGAAGGAGACCTATTGGGGAAACGTGAATCCAATTGgtgagaactg ... aactgattagGTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAA
EST: CCTTGAGCACCCCCAGAAGGAGACCTATTGGGGAAACGTGAATCCAATTG GTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAAEST: gi|30128347|gb|CB913686.1|CB913686
genomic: CCTTGAGCACCCCCAGAAGGAGACCTATTGGGGAAACGTGAATCCAATTGgtgagaactg ... aactgattagGTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAA
EST: CCTTGAGCACCCCCAGAAGGAGACCTATTGGGGAAACGTGAATCCAATTG GTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAA
genomic: CCTTGAGCACCCCCAGAAGGAGACCTATTGGGGAAACGTGAATCCAATTGgtgagaactg ... aactgattagGTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAA
ttctgtatgcctgtggcatttttgtttcaaatgtttaaatacttgaactgattagGTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAATGGATTATCATAGAGGTGCTGAAGTTGAG
atttttgtttcaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaactgataatttcttaacaaatgtttatgctttttgttgtctgttaataggttctgtatgcctgtggcatttttgtttcaaatgtttaaatacttgaactgattagGTGTGAGGAGCTGCTATGATGAAGGAAAACGTACAGCTGAAACTTTGACAATGGATTATCATAGAGGTGCTGAAGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG