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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actagtgaaatttgacaaaattttcataaataaattgttagaaaccttgccttcttaatcaaccaaggttcttatttgaacatatgtctaatttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG

Basic information

species Vitis vinifera
transcript Vv08s0040g02470.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 3'ss of exon 3
actagtg----aaatttgacaaaattttcataaataaattgttagaaaccttgccttcttaatcaaccaaggttcttatttgaacatatgtctaatttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG
 || ||     | |||  || ||   ||  |  |  ||  |  | ||     |       || |    |    |  | | |   | | | | | | || | |||||  |||| ||    |  || |||||||| ||||||||||||||||||||||||||||||||   |
gctggtatttcacattacaccaagaatttctcgaccaaaagaaaaaagaaaagagaggaaaaactctaacaaattgtgtct---cttttctgtcacttgt-cagGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 4
--actagtgaaatttgacaaaattttcataaataaattgttagaaaccttgccttcttaatcaaccaaggttcttatttgaacatatgtctaatttt-tgc-agGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG
    | |||  |    |      | |  |   |      ||   |  | |||     |  | ||  |||  || ||   |||   |   ||| |  | ||| ||||  |||| |||   |  || |||||||| ||||||||||||||||||||||||||||||||||||
ctgtttgtgtcaccc-atgttcctctgctccttggcactttctgatgcatgctcaaatgcttaagaaagactcata---gaagcgactcctattcctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 3
actagtgaaatttgacaaaattttcataaa--taaattgttagaaaccttg----ccttcttaatcaaccaaggttct-tatttg-aacatatgtctaatttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG
         || | |     ||    | |   ||||||||||  |   ||     |  | || |  ||  |   ||   || |||  | ||||  || | | ||||||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||||||| || | |
--------catatcatgttgttcctgtgaccttaaattgttatgatttttattgcctctattgagaaattagacttgaatacttgtgaaatattgctgaatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATG

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G05130.1 (Glycine max), 3'ss of exon 3
actagtgaaatttgacaaaattttcataaa--taaattgttagaaaccttgccttcttaatcaaccaa--ggttct---tatttg-aacatatgtctaatttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG
         || | |     || |  | |   ||||||||||  ||  ||    |||  ||  |  ||  || | |   || ||   | ||||   | | | ||||||||||||||||| |||||||| || ||||||||||||||||||||||| | |||||| || || | |
--------catatcatgttgttcttgtgaccttaaattgttatgaattttattgtctctattgagaaattggatttgaatacttatgaaatattgatgaatcttgcagGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGAACTGGTCTTATTATG

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G35710.1 (Glycine max), 3'ss of exon 5
actagtgaaatttgacaaaattttcataaataaattgttagaaaccttgccttcttaatcaaccaaggttcttatttgaacatat-gtctaatttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG
  |  ||  || |  | |||     | ||| ||  | ||     | ||  |        ||    ||    || ||     |  | | || | | || |||||| |||| || ||||||||||||||||||||||||||||| ||||| ||  | || || ||||||
-ttgttgttatatttccaaaggacaaaaaaaaagatttttttttctttttcaaagattacatttgagcaatttgttaatgtaagttgactgaatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G33000.6 (Glycine max), 3'ss of exon 5
actagtgaaatttgacaaaattttcataaataaattgttagaaaccttgccttctta-atcaaccaaggttcttatttgaacata---tgtctaatttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG
  || | | |||     | |||| || |    ||     |||    ||   |||  | |||| |   |     | | | ||  ||   ||  ||| | || |||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| | || || ||||||
--tactaatatt--gttatatttccaaaggacaaaaaaaagatttttttttttcaaatatcacctttgagcaatttgttaatgtaacttgattaaatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAATCGGGTCTTATCAAG

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 3'ss of exon 3
actagtgaaatttgacaaaattttcataaataaattgttag----aaaccttgccttcttaatcaaccaaggttcttatttgaacatatgtcta-atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG
   | |||  ||   |      ||   |||  | ||  | |    || | |||   | ||  |         |  |||    | |||| |     ||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||| |  || || || || |||
---aatgatgttcatcgcctgattaggaaaccattttatgggtttaatctttgagatattgtt--gtgggaatcattaaccaagcatacggaggcattattacagGTGGTTGAGATAGGAAAAGGGAGCAAGGTGAAATATGAACTCGACAAAACTACGGGTCTCATTAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71889504|gb|DT038559.1|DT038559
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71878052|gb|DT027107.1|DT027107
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110364488|gb|EC924298.1|EC924298
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|30128230|gb|CB913569.1|CB913569
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|18458986|gb|BM437264.1|BM437264
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110375226|gb|EC940190.1|EC940190
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|30124847|gb|CB910186.1|CB910186
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71885238|gb|DT034293.1|DT034293
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|32272447|gb|CD721606.1|CD721606
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|32248310|gb|CD714129.1|CD714129
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71882429|gb|DT031484.1|DT031484
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|33406231|gb|CF211858.1|CF211858
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110383531|gb|EC947909.1|EC947909
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71883308|gb|DT032363.1|DT032363
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110360555|gb|EC923759.1|EC923759
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110708943|gb|EE083969.1|EE083969
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110706103|gb|EE083706.1|EE083706
EST:     CCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: CCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110717369|gb|EE093164.1|EE093164
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71881781|gb|DT030836.1|DT030836
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110701996|gb|EE080208.1|EE080208
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|32271061|gb|CD720220.1|CD720220
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110717373|gb|EE093175.1|EE093175
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|27584534|gb|CB007229.1|CB007229
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110731173|gb|EE109089.1|EE109089
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|32272325|gb|CD721484.1|CD721484
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71888705|gb|DT037760.1|DT037760
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110686108|gb|EE063413.1|EE063413
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110725753|gb|EE102618.1|EE102618
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110688777|gb|EE067713.1|EE067713
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110717105|gb|EE092669.1|EE092669
EST:     AGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: AGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|30129868|gb|CB915207.1|CB915207
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|27583109|gb|CB005804.1|CB005804
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110369553|gb|EC933716.1|EC933716
EST:     CTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: CTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|351025513|gb|FQ435206.1|FQ435206
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110717897|gb|EE094154.1|EE094154
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|32249271|gb|CD715090.1|CD715090
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110730667|gb|EE108007.1|EE108007
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110703181|gb|EE079800.1|EE079800
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|32249038|gb|CD714857.1|CD714857
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110727272|gb|EE103839.1|EE103839
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71877690|gb|DT026745.1|DT026745
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|33406869|gb|CF212496.1|CF212496
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110700548|gb|EE078712.1|EE078712
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110690416|gb|EE067494.1|EE067494
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71878583|gb|DT027638.1|DT027638
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|71888253|gb|DT037308.1|DT037308
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|32271206|gb|CD720365.1|CD720365
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110723089|gb|EE099999.1|EE099999
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110397892|gb|EC963867.1|EC963867
EST:     GACCGGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|351012488|gb|FQ427089.1|FQ427089
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|110374151|gb|EC938723.1|EC938723
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
EST: gi|32267585|gb|CD716548.1|CD716548
EST:     GACCTGGAGCTCCAACAATTTTCAACTGT                         GTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA
genomic: GACCTGGAGCTCCAACAATTTTCAACTGTgtaagaatac ... atttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgccttcttaatcaaccaaggttcttatttgaacatatgtctaatttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG
                                        gtctaat  putative branch site (score: 3)
                                              tttttgc  CT-rich tract
                                    atatgtctaattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actagtgaaatttgacaaaattttcataaataaattgttagaaaccttgccttcttaatcaaccaaggttcttatttgaacatatgtctaatttttgcagGTGGTTGAAATAGGGAAAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - -gacaaaa
- - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaacca