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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT

Basic information

species Vitis vinifera
transcript Vv08s0040g02460.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 2
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                |     ||  ||    | | |        || |  |||  ||  |  | |||    | |   |  ||  || | |  ||  | ||| ||   ||     |  |     || |  | |||| ||||| | |||||||||||| || || |||||||||||||||||  ||||||| | ||| || ||||||||||| || || || ||||| || |||    
-------------gtacgtccgttccttcgctacacattct----tgtttctaactatagatctagcattgagtatttgtacatgcagtttgattcta-tattataatttaactagctttccctgtccattgtGCAATTTGGTTTTATTGTCTTGACCACCTCGGCTGGCATCATGGATCACAAAGAAGCCACGAGGAAGAATGTTGGTGGAAATGTGCTAGGTTTTTTCTAC----

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G328578_T01 (Zea mays), 3'ss of exon 3
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaa--ctgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                                             |  ||  |        ||    |||  |||    | |    ||  ||   | |||  |  | | ||    ||| ||  |        | || ||||||| || || ||| | |||||||||||||| || ||||| ||||| || |||||  | || |||||||||| ||| | ||| |||||||||||||   
-------------------------------------------gttagtccaatccgctgtctctataaaagctgattagagttg-tctgtacaatatgaa-accagtgctaactgtgcctctttgac-tggtgtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCTAGCCGTAAGAATGTTGGTGCCAAGGCTCTAGGTTTCTTTTACTGAA

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G00590.1 (Glycine max), 3'ss of exon 2
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaac-ttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                              |||   |      | | | ||| |   ||  | ||       || | |       |   |  | ||||    | |  | | |  |     |||||        |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||  | |||||||| |||||| 
------------------------------taacctatctgtgattaaactttatgttgtccgttattctcttgtatgcatatggtttctcctgtttgcccctaaactttggttgctcaaaatga--------tgcagTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G00600.2 (Glycine max), 3'ss of exon 3
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                              |||   |      | | | ||| |   ||   ||       || | |       |   |  | ||||    | |  | | |  |     |||||        |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||  | |||||||| |||||| 
-----------------------------ctaacctatctgtgattaaactttatgttgccgttattctcttgtatgcatatggtttctcctgtttgcccctaaactttggttgctcaaaatga--------tgcagTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G45060.1 (Glycine max), 3'ss of exon 3
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                              |||   |      | | | ||| |   ||     |  |  ||     | ||  ||  ||  || |   || ||           ||| |  | |     ||  ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||  | |||||||| |||||| 
-----------------------------ctaacctatctgtgattaaactttatgttg--tccgttattctcttgtgcgcatatggtttctcct---gtttgcccctaaactttgattgctcaaa---atgcgcagTTTGGTTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                             | |  ||  |   || |   || |    | |   ||  |   || |     | |||  ||  ||      |    |  |||  | |   || | | |     ||||||||||| |||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| || || || |||||||| |||||| 
-----------------------------agattaaccattgaactatactgattggttactctgttatgttgaata---caaatggttcctccacttatcccttaccttttgatttatactaatt-----ttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                                |  ||  |   ||  || || | | |  |||  |  |  ||       | |||  ||  ||      |    |   ||    ||| | |||     |||  ||||||||| |||||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||  | || ||||| |||||||
------------------------------agattaaccattgaactatattgatagtttactctgtta--tgttgaatacaaatggttcctccacctatcccttacattt---tgatttatggtaattat--gcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G10950.1 (Glycine max), 3'ss of exon 3
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                    |||    |  |      |    ||||  | ||||  |||   | |||    | ||  |   | ||  ||   | |    | || || |        || ||||        ||||||||||| |||||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||||                              
--------------------attaagctggtgcctgtatcctaaatt-ttttaatcatggtataggctttgtacacagtttccattgttgaccctaacctttgtttac--------acaaatg--------ttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAGAATGTTG------------------------------

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G39590.1 (Arabidopsis thaliana), 3'ss of exon 2
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaact--tggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
       |  |||||  || ||| ||||  | || |||          |||   | |  || |  |||   | ||     |    |||||| |     |  |||  |  |   |  ||  ||   | |    |  ||||||||| || |||||| ||||||| || ||||| |||||||| |||||||| |||||||  ||||||||||| |||||||| |||||||| || |||||| 
------gtaaaaaactaaccattcttttatttaataaa----------tctctgagaccaattcatggtttattgt----gtttgatcattgtg----ggatattctaacaaagtatgtgtaccaaat----tgagcagTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAAGAGGCTAGGAAGAAAAATGTTGGGGGCAAAGTGCTTGGTTTTTTCTACTAG-

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S115_101V6.1 (Physcomitrella patens), 3'ss of exon 2
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcatt---attctttgagtat--gatttc-ttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                                           | | |  || | | |    | || ||  |   || |   | |   |   | |||| | ||||  | || | ||  | |||     |  |  | |||| |||||||||| ||||| |||||||| |||||||| || ||||| || || || || |||||||| || || || || || |||||||||||||||||||  |
-------------------------------------------acttaagttgacagtagtgtggggaatttcgtagtgagtattgcctttgactcttagggtatttggttccattctgctgatgctcgtttcttgtttgtagTTTGGATACATTGTTTTGACAACATCTGCTGGAATTATGGACCACGACGAGGCCAGGAGAAAGAACGTAGGAGGAAAGGTTCTTGGTTTCTTTTACTGAT

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S41_94V6.2 (Physcomitrella patens), 3'ss of exon 3
----------------------------------gttggcatccaaaacccactatttttttta-taaaaaaaaaaaaaatgatcttaaa-aatgaacttggcaaactgcaaggggccaatcattattcttt--gagt--atgatttcttggggtgactaatgagtgctattt--------gcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                                    |   || ||||| |     |    | |  |       | | |  | | |  |    | |     | ||  ||   |     |  |  || ||| ||  ||||   ||   ||||          |||  |  |||||        |||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| || ||||||||||| |||||||| || ||||| ||| | || |||||||||||||
gttattatttaccacctgtcatcgtggtctactcaatattattcaaaatcggtggtacaatgtggtgctgtggagatagcttaacgcatgtgacggttgcgtcatcctagtacttctctttttttcttcgtttagagtcggtggaatcttcattccttatatgtattttatttttgcctgtgcagTTCGGATACATTGTTTTGACCACTTCGGCTGGAATCATGGATCACGACGAAGCTAGGAGGAAAAATGTCGGAGGCAAGGTTTTGGGATTCTTTTACTAGT

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S1_304V6.1 (Physcomitrella patens), 3'ss of exon 2
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                             |   |  ||     |||  || | || | ||  |      || ||  |     |   || |  ||   | | |||||      | ||| |  |   |  | ||||||||||||||| ||||| ||||| || || |||||||||||||| || || || ||||| || || |||||||| || || || ||||||||||||||||   
-----------------------------aacgatcaagcgttaatcctcctcaagaggatttcatgttaccgct-gcttttaggtatgaacctg-aaatctgatt------gttgagtttttcatcttttttgcagTTTGGATACATTGTTTTGACCACCTCAGCTGGCATCATGGACCACGACGAGGCTAGAAGGAAGAATGTTGGAGGAAAGGTCCTTGGTTTCTTTTACTGAG

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ26253 (Selaginella moellendorffii), 3'ss of exon 2
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                                                                |    | |   || | | ||||  |    |      | ||  |   |   |       ||   ||   | |||||||| || |||||  ||||||| ||  |||| ||||||||||| || ||||| ||||| || |||||||||||||| || || || ||||| || |  |
----------------------------------------------------------------gtttgattttgagagacgaatcgatggcttggtgcaaagaactaacgattttctcttcgatctctggct-cagTTTGGCTACATTGTGCTGACAACATCGTCTGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110706292|gb|EE081689.1|EE081689
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|71870593|gb|DT019648.1|DT019648
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|30297968|gb|CB974762.1|CB974762
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|26262523|gb|CA813586.1|CA813586
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCCCAAGACAG                         TTTGGATATATTGTCT-GACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110695174|gb|EE072887.1|EE072887
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110723278|gb|EE100404.1|EE100404
EST:     GTGTCAAAGATATTGAGCACTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110421139|gb|EC987428.1|EC987428
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110427515|gb|EC993958.1|EC993958
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAATAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|71866878|gb|DT015933.1|DT015933
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|28966564|gb|CB345597.1|CB345597
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110696628|gb|EE072909.1|EE072909
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110385929|gb|EC950489.1|EC950489
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|55778140|gb|AJ862926.1|AJ862926
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110365476|gb|EC928529.1|EC928529
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110692301|gb|EE071387.1|EE071387
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110731018|gb|EE108758.1|EE108758
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110707241|gb|EE083471.1|EE083471
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110420349|gb|EC986621.1|EC986621
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110405496|gb|EC971037.1|EC971037
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|30298030|gb|CB974824.1|CB974824
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGCCAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110707255|gb|EE083506.1|EE083506
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT
                                 gactaat  putative branch site (score: 2)
     ttattcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG