Sequence
atgc intronic sequence ATGC exonic sequencegtatattttattgatctttaaataatttatttctttacttcttcctacttttgtttgtcctagtttaaaaaattgaaggaacaactgaaatcactttaattcctcaacttttacagGGTTGGCCATTAAAGAATTTTGGCAAGTAGATGATAGAACTATTGTCTTTGTTGCTGATCCCACCTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G022876_T01 (Zea mays), 3'ss of exon 3
gtatattttattgatctttaaataatttatttctttacttcttcctacttttgtttgtcctagtttaaaaaattgaaggaacaactgaaatcactttaattcctcaacttttacagGGTTGGCCATTAAAGAATTTTGGCAAGTAGATGATAGAACTATTGTCTTTGTTGCTGATCCCACCTTTG
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-----------aaatactagcaggatgcaaatccctatcttgtcatgactctgcatgcgatgtccta-----ttgttgggatttgtttcattgctatttgggctatattgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTGTTGCTGATCCAACCTTTG
upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G06430.2 (Glycine max), 3'ss of exon 3
-gtatattttat-tgatctttaaataatttatt----tctttacttcttcctacttttgt----ttgtcctagtttaaaaaattgaaggaacaactgaaatcactttaattcctcaact-------tttacagGGTTGGCCATTAAAGAATTTTGGCAAGTAGATGATAGAACTATTGTCTTTGTTGCTGATCCCACCTTTG
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gttttcttttctatggtcattgcacaatttagcataatatggatctcatgtaactcacaagctgctattgaaatttaagggtttaagactattattatttaagcttgaaagctgaaactaataaactctgcagGTTTGGCTATTAAAGATTTCTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110689960|gb|EE066639.1|EE066639EST: TACAGGATTCAAGTTGAGAGTTCTAGCTCAGAACTATCCTGACACCCCTG GGTTGGCCATTAAAGAATTTTGGCAAGTAGATGATAGAACTATTGTCTTTG
genomic: TACAGGATTCAAGTTGAGAGTTCTAGCTCAGAACTATCCTGACACCCCTGgtatatttta ... acttttacagGGTTGGCCATTAAAGAATTTTGGCAAGTAGATGATAGAACTATTGTCTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttaaaaaattgaaggaacaactgaaatcactttaattcctcaacttttacagGGTTGGCCATTAAAGAATTTTGGCAAGTAGATGATAGAACTATTGTCTTTGTTGCTGATCCCACCTTTG
ctttaat putative branch site (score: 4)
cttttac putative PPT
aaatcactttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtatattttattgatctttaaataatttatttctttacttcttcctacttttgtttgtcctagtttaaaaaattgaaggaacaactgaaatcactttaattcctcaacttttacagGGTTGGCCATTAAAGAATTTTGGCAAGTAGATGATAGAACTATTGTCTTTGTTGCTGATCCCACCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT