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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggtctacattaatctctcgctctccctctctcttgtgttttgaactagctagcacggtgatgtaacatggggtgatgaatatatatagGATGGAGAAGTTAGACATGAAGAAGTTTAGATGCCAAGCAAAGGTGGTGGGAACCGTGGTGACTGTGGCAGGGGCCATGTTGATGACATTATATAAGGGT

Basic information

species Vitis vinifera
transcript Vv08s0040g00800.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G30640.1 (Glycine max), 3'ss of exon 3
--------------------------------------------gtatgggtctacattaatctctcgctctccctctctcttgtgttttgaactagctagcacggtgatgtaacatggg-gtgatgaatatatatagGATGGAGAAGTTAGACATGAAGAAGTTTAGATGCCAAGCAAAGGTGGTGGGAACCGTGGTGACTGTGGCAGGGGCCATGTTGATGACATTATATAAGGGT
                                              ||  ||    |||| |       | |   | | | |  || |||||    | || || |||  |     |||   | | || ||     ||||||||||||||| |||||||  ||  | |||||||||||||||||| | |||||  | || || || || |||||||||||||||||||| ||||| || 
gtatatttaaataaacaatcggctaatcttgatcttaattcttttaatttgttagtattagtactattttgtttttttttttattgctttga----gataacatggttttactctatgcttgggctggat-----tagGATGGAGAAGTTGGACATGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTATTGTAACAGTTGCTGGGGCCATGTTGATGACATTGTATAAAGGG

upper sequence: Vv08s0040g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G27760.2 (Glycine max), 3'ss of exon 3
-------------------------------gtatgggtctacattaatctctcgctctccct-ctctcttgtgttttgaactagctag---cacggtgatgtaacatggggtgatgaatatatatagGATGGAGAAGTTAGACATGAAGAAGTTTAGATGCCAAGCAAAGGTGGTGGGAACCGTGGTGACTGTGGCAGGGGCCATGTTGATGACATTATATAAGGGT
                                | |   |    ||| || | |  || |   | || | || | ||||| | |   | |    |   || | | ||     ||   | ||  || |||||||||||||||| || |||  ||  | |||||||||||||||||| | ||||| || || || || || |||||||||||||||||||| || || || 
gtaaatttaaatgcataatcagttaatcttaatcttaattc-tattcatttgttactattagtactatttttttttttgtattgctttgagataacatggttttactctctgtttgggatggat-tagGATGGAGAAGTTAAACGTGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTGTAGTAACAGTTGCTGGGGCCATGTTGATGACATTGTACAAAGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttttgaactagctagcacggtgatgtaacatggggtgatgaatatatatagGATGGAGAAGTTAGACATGAAGAAGTTTAGATGCCAAGCAAAGGTGGTGGGAACCGTGGTGACTGTGGCAGGGGCCATGTTGATGACATTATATAAGGGT
                          atgtaac  putative branch site (score: 3)
                                       tgatgaatatatata  TA-rich tract