Sequence
atgc intronic sequence ATGC exonic sequence...agtcaatttcattttgtgtccaaatgcctcatatattattcttgttttcttggtagaagctaacacagctcttgtgtggtgatctcttatctgaccgcagCGCAACTATCGGTTCTTCTTCATGTTTATATCAACATCAACCATCCTGTGCTTATATGTCTTTACATTTTCCTGGATCATCATTATTCAAGGAAAGGGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G27410.1 (Glycine max), 3'ss of exon 3
------agtcaatttcattt-tgtgtccaaatgcctcatatattattcttgttttcttggtagaagctaacacagctcttgtgtggtgatct-cttatctgaccgcagCGCAACTATCGGTTCTTCTTCATGTTTATATCAACATCAACCATCCTGTGCTTATATGTCTTTACATTTTCCTGGATCATCATTATTCAAGGAAAGGGCG
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aacagcaatatgaatcgtttgtgttttctagtgcc-caaatgttctacttcatttcattt------cttaca-agcatttattctctaacatactgacataattgcagCGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCATTTTGTGCATATATGTCTTCTCGTTCTCTTGTATCAATATTGCCCGCAGTGGTGTTT
upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G30360.1 (Glycine max), 3'ss of exon 3
-agtcaatttcattttgtgtccaaatgcct-catatattattcttgttttcttggtagaagctaacacagctcttgtgtggtgatct-cttatctgaccgcagCGCAACTATCGGTTCTTCTTCATGTTTATATCAACATCAACCATCCTGTGCTTATATGTCTTTACATTTTCCTGGATCATCATTATTCAAGGAAAGGGCG
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tccttggcttaatt--ggttagaaacaccaacatgaattaatgttctacttcatttcatttcttaca-agttctagttctctaacatactgacataattgcagCGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCAGTTTGTGCATATATGTCTTCGCGTTCTCTTGTATCAATATTGCCCACAGTGGCATTT
upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G56930.2 (Arabidopsis thaliana), 3'ss of exon 3
agtcaatttcattttgtgtccaaatgcctcatatattattcttgttttcttggtagaagctaacacagctct-tgtgtggtgatctctt--atctgaccgcagCGCAACTATCGGTTCTTCTTCATGTTTATATCAACATCAACCATCCTGTGCTTATATGTCTTTACATTTTCCTGGATCATCATTATTCAAGGAAAGGGCG------------------------------------------------------------------------------------------------------------
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----------------------------gtaagt-ttactccatgactcttgccatatatt--cccggttctatgttttgaacttgtttggattcttttgcagcgaaattaccggttcttcttcatgttcatatcaacatcaaccactctgtgcatatatgtgtttgccttttcttggttgaacatatttcaaagacatatggatgaaaagATTAGCATCTGGAAAGCTATATCCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTGGAGGACTCACAATATTTC
upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G56930.1 (Arabidopsis thaliana), 3'ss of exon 3
agtcaatttcattttgtgtccaaatgcctcatatatt-attcttgttttcttggtagaagctaacacagctct-tgtgtggtgatctctt--atctgaccgcagCGCAACTATCGGTTCTTCTTCATGTTTATATCAACATCAACCATCCTGTGCTTATATGTCTTTACATTTTCCTGGATCATCATTATTCAAGGAAAGGGCG
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------------------------------gtaagtttactccatgactcttgccatatatt--cccggttctatgttttgaacttgtttggattcttttgcagCGAAATTACCGGTTCTTCTTCATGTTCATATCAACATCAACCACTCTGTGCATATATGTGTTTGCCTTTTCTTGGTTGAACATATTTCAAAGACATATGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcttggtagaagctaacacagctcttgtgtggtgatctcttatctgaccgcagCGCAACTATCGGTTCTTCTTCATGTTTATATCAACATCAACCATCCTGTGCTTATATGTCTTTACATTTTCCTGGATCATCATTATTCAAGGAAAGGGCG
tctcttatct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtcaatttcattttgtgtccaaatgcctcatatattattcttgttttcttggtagaagctaacacagctcttgtgtggtgatctcttatctgaccgcagCGCAACTATCGGTTCTTCTTCATGTTTATATCAACATCAACCATCCTGTGCTTATATGTCTTTACATTTTCCTGGATCATCATTATTCAAGGAAAGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - -aaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg