Sequence
atgc intronic sequence ATGC exonic sequence...tgttatatttgtggtttttatttggtgattatatttccttgttctaaaccttatttatcttatttaagatgatgattttattgcctcatattatttacagGGCTAGGGACACCCATTCGACGGGGATTAGGAGGCATATCAATACTGAAGTGGTCACCTACTGGAGATTATTTTTTATCTGCCAAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g00290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G27520.1 (Glycine max), 3'ss of exon 7
tgttatatttgtggtttttatttggtgattatatttccttgttctaaaccttatttatcttatttaagatgatgattttattgcctcatattatttacagGGCTAGGGACACCCATTCGACGGGGATTAGGAGGCATATCAATACTGAAGTGGTCACCTACTGGAGATTATTTTTTATCTGCCAAATT
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----gtacaaa-gatctttgcccccttaagttgttttcacttt----actttgtaatatccatttgaatttcaggttgtttt---ccatattatttatagGTGTGGGAACACCCATTCGACGTGGATTAGGAGGCATATCAATGCTGAAGTGGTCACCTACTGGAGATTACTTCTTTGCTTCAAAATT
upper sequence: Vv08s0040g00290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G30500.1 (Glycine max), 3'ss of exon 7
tgttatatttgtggtttttatttggtgattatatttccttgttctaaaccttatttatctta-tttaagatgatgattttattgcctcatattatttacagGGCTAGGGACACCCATTCGACGGGGATTAGGAGGCATATCAATACTGAAGTGGTCACCTACTGGAGATTATTTTTTATCTGCCAAATT
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-------------------gtacaaagatcttttttccct----taagttgttttcactttactttgtgacatccattcgaatttctgaatttctggttagGTGTGGGAACACCCATTCGACGTGGATTAGGAGGCATATCTATGCTGAAGTGGTCACCTACTGGAGATTACTTCTTTGCTTCAAAATT
upper sequence: Vv08s0040g00290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G56900.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------tgttatatttgtggtttttatttggtgattatatttcct--tgttctaaaccttatttatcttatt----taagatgatg--------attttattgcctc--------------atattatttacagGGCTAGGGACACCCATTCGACGGGGATTAGGAGGCATATCAATACTGAAGTGGTCACCTACTGGAGATTATTTTTTATCTGCCAAATT
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gtaactagaacgacaattaagaacactttcttaatgcacaacatcatgcaaatgtttgaacattaatccagcttcctcttatttaacatcctatctgttgcgttgagatgagaaaatgcatcttgcaattccttgtttctgaaagtgatatgtatacatcttccagGGGCAGGGACACCTATTAGACGGGGACTAGGTGGAATATCAATGCTTAAATGGTCACCTACAGGAGACTACTTCTTTGCAGCAAGATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaccttatttatcttatttaagatgatgattttattgcctcatattatttacagGGCTAGGGACACCCATTCGACGGGGATTAGGAGGCATATCAATACTGAAGTGGTCACCTACTGGAGATTATTTTTTATCTGCCAAATT
ttctaaa putative branch site (score: 2)
ttatttatcttattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttatatttgtggtttttatttggtgattatatttccttgttctaaaccttatttatcttatttaagatgatgattttattgcctcatattatttacagGGCTAGGGACACCCATTCGACGGGGATTAGGAGGCATATCAATACTGAAGTGGTCACCTACTGGAGATTATTTTTTATCTGCCAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - ttgtggt
- - - - - - - - - - - tggtgat
- - - - - - - - - - - - - - - - - ttccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctca