Sequence
atgc intronic sequence ATGC exonic sequence...tgctggatacctagtgttgtccatagaagtttgctttaacgcatctgttttctcttttaagtcattttgtatttattttatatgatgttatcttctgcagCCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGGATCCCCAGCTGTTATCTTTCATAGATGCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G10990.1 (Glycine max), 3'ss of exon 3
tgctggatacctagtgttgtccatagaagtttgctttaacgcatctgttttc--tcttttaagtcattttgta-tttattttatatgatgttatcttctgcagCCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGGATCCCCAGCTGTTATCTTTCATAGATGCTGAG
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---ttggcattgaccaccatctgcacatccctccatatttgtgccttttatcaatgttttcagatgttttgttctttagcctttctgacgatatttttggcagCCTATTATTTGCCTCAAAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAG
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G34060.1 (Glycine max), 3'ss of exon 3
tgctggatacctagtgttgtccatagaagtttgctttaacgcatctgttttctcttttaagtcattttgtatttatt---ttatatgatgttatcttctgcagCCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGGATCCCCAGCTGTTATCTTTCATAGATGCTGAG
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---tgggttgccattgaccaccatctgcacatccctccatatttgagctttttatcaatgtttatgttttgtccattagcctttctgacaatatttttggcagCCTATTATTTGCCTCAGAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAG
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------------------------------tgc-tggatacctagtgttgtccatagaagtttgctttaacgcatctgttttctcttttaagtcattttgtatttattttat-atgatgttatct----tctgcagCCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGGATCCCCAGCTGTTATCTTTCATAGATGCTGAG
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gtattcatctaaatcttctgaaatgaatttggacttaaagttgtgtttggtgtgtgtgtagatatttattgctgtgagtccgtatacgtcct---gcgtagatacacatagaaaaatctactgacatgaatcttgttgtgttattctctgtgctgtatagCTTATTACTTGCCCCAAAATGCTGGGGCTATAGCTCGGAAGTACATAAAGGATCCTCAATTATTGTCTTTCATTGATGCAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714576|gb|FC063560.1|FC063560EST: CTACCTTTTCGGACAGTTCTTTCAGAAGCCTCTTGAATGCTTGACACTTG CCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGG
genomic: CTACCTTTTCGGACAGTTCTTTCAGAAGCCTCTTGAATGCTTGACACTTGgtaattgttt ... tcttctgcagCCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttttctcttttaagtcattttgtatttattttatatgatgttatcttctgcagCCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGGATCCCCAGCTGTTATCTTTCATAGATGCTGAG
ttatcttct CT-rich tract
ttttaagtcattttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgctggatacctagtgttgtccatagaagtttgctttaacgcatctgttttctcttttaagtcattttgtatttattttatatgatgttatcttctgcagCCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGGATCCCCAGCTGTTATCTTTCATAGATGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
tgctgga
- - - - - - - tgttgtc