Sequence
atgc intronic sequence ATGC exonic sequencegtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccagGGAGTCTCTGCAGTGGGAGCATTCTATGAACTACTGAGTCAGTCAAGCTTGAGCGTGTTGCATCCTGAAGAAAACAAGCATGTGGCTCCTGTTGAGCTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G28970.1 (Glycine max), 3'ss of exon 3
gtattggtcatgattctttacttggcaacagtt------caactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccagGGAGTCTCTGCAGTGGGAGCATTCTATGAACTACTGAGTCAGTCAAGCTTGAGCGTGTTGCATCCTGAAGAAAACAAGCATGTGGCTCCTGTTGAGCTCT
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---atccttgtgtgtttctccttagaaacagttttttgccttcattcaaatcccaatataactaaataaaaatgatatccctgaccctgccatttatttctagGGAGTGTCAGCAGTGGAGGCATTCTTTGAACTTCTGAGCCAATCTAGCCTGAATGTGTTGCATCCTGAAGAAAACAAACCTGTTGCTCCTGTAGAGCTCT
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G33340.1 (Glycine max), 3'ss of exon 4
---gtattggtcatgattctttacttgg-caacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccagGGAGTCTCTGCAGTGGGAGCATTCTATGAACTACTGAGTCAGTCAAGCTTGAGCGTGTTGCATCCTGAAGAAAACAAGCATGTGGCTCCTGTTGAGCTCT
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ttttccttcatttaatttctcctctcactcaacattttgtcttaattgattcactcaaattcttctga-ctgaaaaaaatgactgctatttatttttgaagGGTGTCTCTGCAGTGGAGGCATTTTTTGAACTTTTGAGCCATTCAAGCCTGAATGTGTTGCATCCTGAAGAAAACAAGCCGGTTGCTCCTGTTGAACTCT
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G15900.1 (Glycine max), 3'ss of exon 3
----gtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccagGGAGTCTCTGCAGTGGGAGCATTCTATGAACTACTGAGTCAGTCAAGCTTGAGCGTGTTGCATCCTGAAGAAAACAAGCATGTGGCTCCTGTTGAGCTCT
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tctttaatttgttaatttctcctctcactcaacattttgtcttcgttgattcactcaaattcttctgactaaaaaaaatgggtgcaattgatatttgt-agGGTGTCTCTGCAGTGGAGGCATTCTTTGAACTTTTGAGCCATTCAAGCCTGAATGTGTTGCACCCAGAAGAAAACAAACCGGTTGCTCCTGTTGAACTCT
upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G31730.1 (Glycine max), 3'ss of exon 3
gtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattt-tcttctttggaattgtcatc--------agaacctcttgcc-ttattttccagGGAGTCTCTGCAGTGGGAGCATTCTATGAACTACTGAGTCAGTCAAGCTTGAGCGTGTTGCATCCTGAAGAAAACAAGCATGTGGCTCCTGTTGAGCTCT
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-----gaaagagaaatcatccttgt--gtatttctccttagaatccattttttgccttcaatcaaatcccaattactaaacaaaaatgctatgccatttatttctagGGTGTGTCAGCAGTGGAGGCGTTCTTTGAACTTCTGAGCCAATCTAGCCTGAATGTGTTGCATCCTGAAGAAAACAAACCTGTTGCTCCTGTAGAACTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccagGGAGTCTCTGCAGTGGGAGCATTCTATGAACTACTGAGTCAGTCAAGCTTGAGCGTGTTGCATCCTGAAGAAAACAAGCATGTGGCTCCTGTTGAGCTCT
cctcttgccttatttt CT-rich tract
atattttcttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccagGGAGTCTCTGCAGTGGGAGCATTCTATGAACTACTGAGTCAGTCAAGCTTGAGCGTGTTGCATCCTGAAGAAAACAAGCATGTGGCTCCTGTTGAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA