Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcgattaattaattaaaaaaaatttaagcttcaaacatgtgtttgagagatgcattaactgacaaaaattgctcggtatggacacagGTCATGGCTCGGTCTTTGCCTTCAGACAAGCACACTTTGGTAACCCATCTCAGGAAATTGTATGGTGAGGTTGTTGCAGTGACAGGTGATGGGACAAATG

Basic information

species Vitis vinifera
transcript Vv08s0007g08960.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G31770.1 (Glycine max), 3'ss of exon 1
-------------------gtttgcga---ttaattaattaaaaaaaatttaagcttcaaacatgtgtttgagaga-tgcatt-aactgacaaa--aattgctcggtatggacacagGTCATGGCTCGGTCTTTGCCTTCAGACAAGCACACTTTGGTAACCCATCTCAGGAAATTGTATGGTGAGGTTGTTGCAGTGACAGGTGATGGGACAAATG
                    | || ||   | | ||  | |  | |     |||  |     | ||||||   |   |  ||| |  ||       |  | || | |||||   ||||| ||||| || || || |||   ||||||||||  || |||||| || | |||||||||| ||||||||||||||| || || |||||||| || ||||
gttctgatctcatctcaaattctgtgactttcagttcttgaggacagggaaaagggtaggttaggtgttttgtatcctctattgagatggtttcttatgtacttgatatggtttcagGTGATGGCACGATCCTTACCTCTGGACAAGCACAGATTAGTAACCAATTTGAGGAAATTGTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatgtgtttgagagatgcattaactgacaaaaattgctcggtatggacacagGTCATGGCTCGGTCTTTGCCTTCAGACAAGCACACTTTGGTAACCCATCTCAGGAAATTGTATGGTGAGGTTGTTGCAGTGACAGGTGATGGGACAAATG
                        aactgac  putative branch site (score: 2)
                             acaaaaatt  TA-rich tract