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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttgccatcttcattccaatggaattgaatgctctattttgcctaaatttaaaaattcagaatgccccgatttttatgagttttcaagcctgttactaaaattttattactacttgccccttcaatatatgatttctgtgtataatccttacagGTGCTGTGGAGCTGGCTGCTGTAGGAGTCTCCATTGCTGTGTTTAATCAAGTATCGAGAATTGCCATTTTCCCCCTTGTCAGTATTACAACTTCTTTTGT

Basic information

species Vitis vinifera
transcript Vv08s0007g08200.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 3'ss of exon 2
gtttgtatttgccatcttcattccaatggaattgaatgctctattttgcctaaatttaaaaattcagaatgccccgatttttatgagttttcaagcctgttactaaaattttattactacttgccccttcaatatatgatttctgtgtataatccttacagGTGCTGTGGAGCTGGCTGCTGTAGGAGTCTCCATTGCTGTGTTTAATCAAGTATCGAGAATTGCCATTTTCCCCCTTGTCAGTATTACAACTTCTTTTGT
                                           | || |   | | ||| |    | || |  |  ||| | ||    ||||||| || | ||| |  |||| |  | | ||           || ||||| || |   |  ||   |||||  | || || || || ||||| || || || ||||| ||||||||||||||||| || ||||| || || |||||||||||| | || || || |||||
------------------------------------------ttcttactgtattgtaatagaaaaaaagggacacattctgat----tttcaagtctttgactta--ttttgtctcaagtta----------atttgattccttt---tgttcaaaacagGCCCAGTTGAACTTGCAGCTGTTGGTGTATCTATTGCCGTGTTTAATCAAGTATCAAGGATTGCAATATTTCCCCTTGTCAGTGTCACGACATCATTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttattactacttgccccttcaatatatgatttctgtgtataatccttacagGTGCTGTGGAGCTGGCTGCTGTAGGAGTCTCCATTGCTGTGTTTAATCAAGTATCGAGAATTGCCATTTTCCCCCTTGTCAGTATTACAACTTCTTTTGT
                                              tccttac  CT-rich tract
                     ttcaatatatgattt  TA-rich tract