Sequence
atgc intronic sequence ATGC exonic sequence...gcaccggtttaatataaagtactctaatttagtcatgttttaaattttaaaatctaaccttttaatcagattgtttatcatgtaattctttttttgatagGACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G04690.1 (Glycine max), 3'ss of exon 3
-------------------------------------gcaccggttt----aatataaagtactctaatttagtcatgttttaaattttaaaatctaaccttttaatcagattgtttatcatgtaattctttttttgatagGACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTG
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gtgagtctttgaccagggaaatattacctttttgtttgttgtagttttaccactttttggagcttttttttggt-gttctttgatcgtgtttatgtcaattttggtctgaggaatttgttatctgact----ttctaatagGATCCAAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTG
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G26850.1 (Glycine max), 3'ss of exon 3
------------------gcaccggtttaatataaagtactctaatttagtcatgttttaaatt--ttaaaatctaaccttttaatcagat--tgtttatcatgtaattct-----ttttttgatagGACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTG
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gtgagtctttgacacagggaaatatgcttttttattttatttttatttttggcttttctaggtgtattatgattatgcttcctttttaggggatgaagagtatcttattctcaatgctttgtgacagGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G07830.1 (Glycine max), 3'ss of exon 3
----------------------------gcaccggtttaatataaagtactctaatttagtcatgttttaaattttaaaatctaaccttttaatcaga--ttgtttatcatgtaattct-----ttttttgatagGACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTG
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gtgagtctttgactcagggaaatacgttttttttttttcttatattttgggcttttctaggtgtattatga-ttatgcacttatgcttcctctttaggggctgaagaatctcttattctcaatgttttgtgacagGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 3'ss of exon 3
gcaccggtttaatata---aagtactctaattta-gtcatgttttaaattttaaaatctaaccttttaatcagattgtttatcatgtaattctttttttgatagGACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTG
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--atctgttggatattcgtaggtagttatatatatattatatattaa--cgaaaactcttctctggtattcaggctactgatttgtcagcttcatgttttatagGACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTGAACAATGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaaaatctaaccttttaatcagattgtttatcatgtaattctttttttgatagGACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTG
ttcttttttt CT-rich tract
tttatcatgtaattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaccggtttaatataaagtactctaatttagtcatgttttaaattttaaaatctaaccttttaatcagattgtttatcatgtaattctttttttgatagGACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - aatataaa
- - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgta