Sequence
atgc intronic sequence ATGC exonic sequence...cttttttttttttttttttaggaaatgaacgaatcttatcgtgtcatctgtgttttttttgtcttatcttgtcatttctaagttacgatttgaattttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTTTGATATCTCCATATAGAAAGGACCGAGATGCTTGCCGTGCAATGTTGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G327406_T08 (Zea mays), 3'ss of exon 3
------cttttttttttttttttttaggaaatgaacgaatcttatcgtgtcatctgtgttttttttgtcttatcttgtcatttctaagttacgatttgaattttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTTTGATATCTCCATATAGAAAGGACCGAGATGCTTGCCGTGCAATGTTGCC
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gcacaggttttccaaatccgcctccatgcctcaaaggtcacagatcct-tggaagattttgcacttagcagttcacattttgtttcaactat--tttgaac---agGTGAAGTAGCAAAGTTATTTTCAGACGCTGGCCTTGTATGTATTGCAAGTTTGATATCTCCATATAGGAGAGACCGTGAATCTTGCCGTGCACTGTTGTC
upper sequence: Vv08s0007g07370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G061234_T01 (Zea mays), 3'ss of exon 3
----------------------------------------cttttttttttttttttttaggaaatga---acgaatcttatcgt----gtcatctgtgttttttttgtcttatcttgt-catttctaagttacgatttgaattttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTTTGATATCTCCATATAGAAAGGACCGAGATGCTTGCCGTGCAATGTTGCC
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gtaagtgtctcacaaacatatatatgcttacaatatttaaaggaattatcataaaagaaaaggaatgatatacaagtcctacttttgccattatttttatctttccagcactgtgcagttcacatcttggttgaactatttcggacagGTGAAGTAGCAAAGTTATTTGCAGATGCGGGCCTTGTATGTATTGCAAGTTTGATATCTCCATATAGGAGAGACCGTGAATCTTGCCGTGCATTGTTGTC
upper sequence: Vv08s0007g07370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G28900.2 (Glycine max), 3'ss of exon 3
--cttttttttttttttttttaggaaatgaacgaatcttatcgtgtcatctgtgttttttttgtcttatcttgtcatttctaagttacgatttgaat--tttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTTTGATATCTCCATATAGAAAGGACCGAGATGCTTGCCGTGCAATGTTGCC
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ggttgtatcagttgtaagtctagctgctgtatgt-taaaaaaatctgatgcagatttgtctt---ccaacttggttttactgatctggaaattatttaattcagGAGAAGTGGCAAAACTCTTCGCTGATGCTGGTTTAATATGTGTTGCTAGTCTGATATCTCCTTACAGAAGAGATCGAGACACTTGCCGTGCCATGTTACC
upper sequence: Vv08s0007g07370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G03900.1 (Arabidopsis thaliana), 3'ss of exon 2
cttttttttttttttttttaggaaatgaacgaatcttatcg-tgtcatctgtgttttttttgtc--ttatcttgtcatttctaagttacgatttg----aattttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTTTGATATCTCCATATAGAAAGGACCGAGATGCTTGCCGTGCAATGTTGCC
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-------tggtatacacctaaaagctgatagattctggttaatgttgaaagaaacttctctaaagggcaaaatactaaagaagaccaacaatttgttctaaatgcagGAGAAGTAGCCAAACTCTTTGCGGATGCTGGTTTAATCTGTATTGCCAGCCTCATATCCCCGTATAGAAAAGACCGTGACGCCTGCAGGGAAATGATACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351020123|gb|FQ445730.1|FQ445730EST: GGATCTTGGATTCAAAGCAGAAGATCGAACAGAAAATATACGCAGAGTTG GGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTT
genomic: GGATCTTGGATTCAAAGCAGAAGATCGAACAGAAAATATACGCAGAGTTGgtaagtatgt ... tgaattttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTT
EST:
gi|110388772|gb|EC953559.1|EC953559EST: GGATCTTGGATTCAAAGCAGAAGATCGAACAGAAAATATACGCAGAGTTG GGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTT
genomic: GGATCTTGGATTCAAAGCAGAAGATCGAACAGAAAATATACGCAGAGTTGgtaagtatgt ... tgaattttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctgtgttttttttgtcttatcttgtcatttctaagttacgatttgaattttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTTTGATATCTCCATATAGAAAGGACCGAGATGCTTGCCGTGCAATGTTGCC
ttttttttgtcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttttttttttttttttttaggaaatgaacgaatcttatcgtgtcatctgtgttttttttgtcttatcttgtcatttctaagttacgatttgaattttagGGGAAGTAGCAAAACTCTTTGCAGATGCTGGTTTGATCTGTATTGCCAGTTTGATATCTCCATATAGAAAGGACCGAGATGCTTGCCGTGCAATGTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - aaatgaa