1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttcatcattatgtgattattgttgtcatcatttttcttgttggttgctgcctctagactaacatgtaaatattttgattctgctgcatgtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAA
species | Vitis vinifera |
transcript | Vv08s0007g06550.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCT AEST: gi|161720919|gb|FC070323.1|FC070323
genomic: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCTgtaagtattt ... gtttagacag-
EST: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCT AEST: gi|351017551|gb|FQ435904.1|FQ435904
genomic: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCTgtaagtattt ... gtttagacag-
EST: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCT CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCAEST: gi|352786912|gb|FQ481287.1|FQ481287
genomic: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCTgtaagtattt ... gtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCA
EST: GTTCAAAAGGGTAAAAGTTTTGTCTGCTTTCACCAATGCT CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCAEST: gi|349826952|gb|FQ419043.1|FQ419043
genomic: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCTgtaagtattt ... gtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCA
EST: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCT CTGTTTCTGTTGTTEST: gi|351012123|gb|FQ429929.1|FQ429929
genomic: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCTgtaagtattt ... gtttagacagCTGTTTCTGTTGTT
EST: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCT CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCAEST: gi|351026468|gb|FQ428480.1|FQ428480
genomic: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCTgtaagtattt ... gtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCA
EST: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCT CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCAEST: gi|349829079|gb|FQ419611.1|FQ419611
genomic: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCTgtaagtattt ... gtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCA
EST: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCT CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAACACTTCATGCA
genomic: GTTCAAAAGGGTAGAAGTTTTGTCTGCTTTCACCAATGCTgtaagtattt ... gtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCA
ttgctgcctctagactaacatgtaaatattttgattctgctgcatgtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAA
taacatgtaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcatcattatgtgattattgttgtcatcatttttcttgttggttgctgcctctagactaacatgtaaatattttgattctgctgcatgtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgctg