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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatttggtcattttcaaaggttttctgatttcctagggtcatatatcttgcagagatatttaatttccactacatagacttttgtagttgtgctgaaatagatccttatgtgactgtaattctgaaaacagGAAATTAATATTGCCATCATTTGCTGCTCTTCCCCTGTTGATGGCTTATGCTGGCCATACCACTATAATTATACCAAAGCCTCTCATCCCATACGTTGGG

Basic information

species Vitis vinifera
transcript Vv08s0007g05920.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g05920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G34640.1 (Glycine max), 3'ss of exon 3
gtgagtatttggtcattttcaaaggttttctgatttcctagggtcatatatcttgcagagatatttaatttccactacatagacttttgtagttgtgctgaaatagatccttatgtgactgtaattctgaaaacagGAAATTAATATTGCCATCATTTGCTGCTCTTCCCCTGTTGATGGCTTATGCTGGCCATACCACTATAATTATACCAAAGCCTCTCATCCCATACGTTGGG
                              ||| |   || | |   ||   ||||      | ||  |      ||  ||   | ||  ||| ||   |   | || | |||||| | ||| |     | ||||| |||||| || | |||||| ||||||| |||||  |||| ||||| |||||||| || || |||||| ||||||||||||| ||  ||||| || |||||
-----------------------------gtgagtatataagttttcatcatttgcttcctgaatttgtgcttgttaactaa--tgttagagtagtttcgtttttga-ctttatgtcaatgtga-----agaacagAAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGG

upper sequence: Vv08s0007g05920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G16320.1 (Glycine max), 3'ss of exon 3
gtgagtatttggtcattttcaaaggttttctgatttcctagggtcatatatcttgcagagatatttaatttccactacatagacttttgtagttgtgctgaaatagatccttatgtgactgtaattctgaaaacagGAAATTAATATTGCCATCATTTGCTGCTCTTCCCCTGTTGATGGCTTATGCTGGCCATACCACTATAATTATACCAAAGCCTCTCATCCCATACGTTGGG
                      | || | |   ||| |     | || |   |    ||     ||  |      ||  ||   | ||  ||| ||  ||   | |||  ||||||   ||| |     | ||||| || ||| || | |||||| ||||||| |||||  |||| ||||| |||||||| || || |||||| ||||||||||||| ||  ||||| || |||||
--------------------gtaagtatacaagttttc----attatttgcttcctgga-----tttgtgcttgttaactaa--tgttagagtagttttgtttttgatt-ttatgtcgatgtga-----agaacagAAAGTTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGG

upper sequence: Vv08s0007g05920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G41490.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtatttggtcattttcaaaggttttctgatttcctagggtcatatatcttgcagagatatttaatttccactacatagacttttgtagttgtgctgaaatagatccttatgtgactgtaattctgaaaacagGAAATTAATATTGCCATCATTTGCTGCTCTTCCCCTGTTGATGGCTTATGCTGGCCATACCACTATAATTATACCAAAGCCTCTCATCCCATACGTTGGG
                                          ||| ||  || | ||    |||||  |||  |  | ||  ||  || | ||| |  |||   | ||  |||  ||     ||||   | ||||| ||  |  |  ||||||| |||||| | ||||| || ||||||||||||||||| ||||| |||||  |||||||||| |||||  |  | ||  |||| 
--------------------------------------gtaagtcctaattcctaca----tattt--ttttgatgaaattcacgcttatcgtttt--tgattcacatgtttac-tgttgtcaatttaaacaacagAAAGCTTGTCCTGCCATCTTTTGCTACCCTTCCACTTTTGATGGCTTATGCTGGTCATACAACTATTGTTATACCAAAACCTCTTGTTGCTTATATTGGC

upper sequence: Vv08s0007g05920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G57220.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtatttggtcattttcaaaggttttctgatttcctagggtcatatatcttgcagagatatttaatttccactacatagacttttgtagttgtg-ctgaaatagatccttatgtgactgtaattctgaaaacagGAAATTAATATTGCCATCATTTGCTGCTCTTCCCCTGTTGATGGCTTATGCTGGCCATACCACTATAATTATACCAAAGCCTCTCATCCCATACGTTGGG
                                                            |  |  | ||  || |   | |  ||    | |  ||  | |  |   |  |  | | |       ||      ||||||| |  | |||||||| |||||  | ||||| |||||||||||||||||||| ||||| |||||  | ||||| || ||| |  |  | ||  |||| 
----------------------------------------------------------gtaggtgcagttctcattttgttggattaaaaattcatgatttagttttgttttcttattaactcttgtcaatttgcagGAAACTTCTCTTGCCATCTTTTGCAACCCTTCCACTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAAACCTTTAGTTTCTTATATTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttttgtagttgtgctgaaatagatccttatgtgactgtaattctgaaaacagGAAATTAATATTGCCATCATTTGCTGCTCTTCCCCTGTTGATGGCTTATGCTGGCCATACCACTATAATTATACCAAAGCCTCTCATCCCATACGTTGGG
                   aaatagat  TA-rich tract