Sequence
atgc intronic sequence ATGC exonic sequence...aaagtcaagaattcttcggtactgttagtgaaaaatgggcttatgtttattatgttgttctggttccaaatttaatgtttttttttttttatcttgtcagAGAACTTCTACATACAAAGAAGAGACAGGAGGATACACATAACCATTTAAAAACTGTTCTGGGAGATGCCATGATAAGTTGTGACATAAGTATGGTTGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G06630.1 (Glycine max), 3'ss of exon 3
aaagtcaagaattcttcggtactgttagtgaaaaatgggcttatgtttattatgttgttctgg-----ttccaaatttaatgtttttttttttttatct-tgtcagAGAACTTCTACATACAAAGAAGAGACAGGAGGATACACATAACCATTTAAAAACTGTTCTGGGAGATGCCATGATAAGTTGTGACATAAGTATGGTTGGC
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----tggaagcttcttttcttatgt--acaaatgcccatttgatgacaattccatctcctttgagagcttactaatgtagtgtactctatcttacatctgtatcagGGAACTTCTACATACAAAGAAGAGAAAGGATGAAACGATTGAACACTTAACAGAGATTATGGGAGATGCCATCATTTCTATTGACATTGAATTGGTTGGC
upper sequence: Vv08s0007g04890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G34210.1 (Glycine max), 3'ss of exon 3
aaagtcaagaattcttcggtactgt-tagtgaaaaatgggcttatgtttattatgttgttctggttccaa---atttaatgttt--ttttttttttatcttgtcagAGAACTTCTACATACAAAGAAGAGACAGGAGGATACACATAACCATTTAAAAACTGTTCTGGGAGATGCCATGATAAGTTGTGACATAAGTATGGTTGGC
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------gagattaatttgttgttgtatagtgtgcatttgattacaattccatatatttttactgaactaactaacctattgcttaatcttatatgcatatgatcagGGAACTTCTACATACAAAGAAGAGAAGAGATGACACAATCGAACAGTTGGCAGCTATTTTGGGGGATCCCTTAATTGCCATTGACATTGAGTTGGTTGGC
upper sequence: Vv08s0007g04890.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G36910.1 (Glycine max), 3'ss of exon 3
aaagtcaagaattcttcggtactgt-tagtgaaaaatgggcttatgtttattatgtt-gttctggttccaaatttaatgttt--ttttttttttatcttgtcagAGAACTTCTACATACAAAGAAGAGACAGGAGGATACACATAACCATTTAAAAACTGTTCTGGGAGATGCCATGATAAGTTGTGACATAAGTATGGTTGGC
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----tggaggttaattttctgatgtatactgtgcacttgattacaatttcatgtgtttactatactaactaacttattgcttaatcttgtatacatatgatcagGGAACTTCTACATACAAAGAAGAGAAGGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGGGATCCCTTAATTACCATTGACATTGAATTGGTTGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttattatgttgttctggttccaaatttaatgtttttttttttttatcttgtcagAGAACTTCTACATACAAAGAAGAGACAGGAGGATACACATAACCATTTAAAAACTGTTCTGGGAGATGCCATGATAAGTTGTGACATAAGTATGGTTGGC
atttaat putative branch site (score: 4)
tgttttttttttttta CT-rich tract
ttccaaatttaatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaagtcaagaattcttcggtactgttagtgaaaaatgggcttatgtttattatgttgttctggttccaaatttaatgtttttttttttttatcttgtcagAGAACTTCTACATACAAAGAAGAGACAGGAGGATACACATAACCATTTAAAAACTGTTCTGGGAGATGCCATGATAAGTTGTGACATAAGTATGGTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - tcaagaa
- - - - - - - - - - -ctgttag
- - - - - - - - - - - - - - tgaaaaa
- - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaatt