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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgatcatccttgctactactaaagaaattctcttaattatgcatgggtgctaatgtctaaacttttaatatgctgattatcctcagATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTG

Basic information

species Vitis vinifera
transcript Vv08s0007g04220.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g04220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g53720.2 (Oryza sativa), 3'ss of exon 2
gtaagctgatcatccttgctactactaaagaaattctcttaattatgcatgggtgctaatgtctaaacttttaatatgctgattatcctcagATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTG
      | |  |   || |  || |  |||   |  | | |||| | | ||  |  ||     |||| |   || |   || ||   |  |||||||||| ||||||| |||||| || |||||||||||  | ||||| |||||||||||||| || || ||||| || |||||  | || |||||| | |
-----gtaacaaattttccatcttcgtaagctttcatgtaaattgttc-tgaattataga---taaaatacaaagacattgttt---cctagATTGCCTTGGGTGGTCGATATTCACGTGAGTTCTTCAATCGTTATGGGGATTTGAGGCACATTCGGCGCTTGCGGTTTTGGCCGCTCAACAAGGTTTTGG

upper sequence: Vv08s0007g04220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G009843_T02 (Zea mays), 3'ss of exon 4
gtaagctgatcatccttgctactactaaagaaattctcttaattatgcatgggtgctaatgtctaaacttttaatatgc---tgattatcctcagATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTG
||||||      ||  |  ||  |||    | | | | | |   |    |  | |    ||||   | ||||  ||| |   | ||  | | ||||| || || |||||||  || || || || ||||||||  | || || ||||||||||||||||| |||||||| ||||||||  | || ||||| ||  
gtaagcaaggtttcaatttta--acttgccatagtttttaagaaaaagttcagcg----tgtccttaattttggtatacgaataatgtttcccagATCGCGTTGGGTGGTCGGTACTCACGTGATTTCTTCAATCGGTACGGGGATTTGAGGCACATCCGACGGTTGCGGTTCTGGCCTCTCAACAAGGTGCTGA

upper sequence: Vv08s0007g04220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G21320.1 (Glycine max), 3'ss of exon 3
gtaagctgatcatccttgctactactaaagaaattctcttaattatgcatgggtgctaatgtctaaacttttaatatgctgatt---atcctcagATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTG
||||    ||  | ||  | | | ||   |   |  | || ||  | ||| |||  |  ||  |||   || | | ||  ||||   || ||||||| ||  | ||||| |  |||||||| || ||||| || ||||||||||| || ||||||||||| |||||||| ||||||||| ||||||| || || |
gtaacaatattgttctatccatttcttgggtcttaatatttatggttcattggt--ttgtgattaa--cttgagtctgtggattataattctcagATAGCACTTGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATCCGGCGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCG

upper sequence: Vv08s0007g04220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G07430.1 (Glycine max), 3'ss of exon 3
gtaagctgatcatccttgctactactaaagaaattctcttaattatgcatgggtgctaatgtctaaacttttaatatgctgatt---atcctcagATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTG
||||    |   | ||| | | | ||   |      |||| ||  | |||   || | |||  |||   || |   ||| ||||   || ||||||| ||  ||||||| |  |||||||| || ||||| || ||||||||||| || |||||||| || |||||||| ||||||||| ||||||| || ||  
gtaacagtactgttctttccatttcttggg------tctttatggttcatt--tgttcatgattaa--cttgaggctgcggattataattctcagATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATTCGACGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaattatgcatgggtgctaatgtctaaacttttaatatgctgattatcctcagATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTG
                                             ttatcctc  CT-rich tract
                   taatgtctaaactttt  TA-rich tract