Sequence
atgc intronic sequence ATGC exonic sequence...ttggaatttaattttctcttttctctcccacagtgttctgttaaactatttaataatagcatctgccagctaggacgctgatgtggcagtttctttgcagTGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G07560.1 (Glycine max), 3'ss of exon 4
ttggaatttaattttctcttttctctcccacagtgttctgttaaact---atttaataatagcatctgccagctaggacgctgatgtggcagtttcttt--gcagTGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTT
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---tatcgcaaatcattcctaattacaagatgaattttttttaatttctaatttcattgtagcaa-tgtt-gttgaattaacaatgcattttcttcttttttcagTGAATGCCAATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTGCACTTATGCCTTCTT
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G21440.1 (Glycine max), 3'ss of exon 4
ttggaatttaattttctcttttctctcc-cacagtgttctgttaaactatttaataatagcatctgccagctaggacgctgatgtggcagtttctttg-cagTGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTT
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ttatattccaataatttttacttacaagataaaatttctaatttgattgt--agcaatgttgttaaattaacaatgcattttttttcttttttctttttcagTGAATGCCAATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTGCACTTACGCCTTCTT
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G34800.1 (Glycine max), 3'ss of exon 3
ttggaatttaattttctcttttctctcccacagtgttctgttaaactatttaataatagcatctgccagctaggacgctgatgtggcagtttct--ttgcagTGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTT
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--gaaaatcaatataattacaaaaatggcattgcaaatttcatggcagctaagttgttgacgaggcaatttattgatttattgatttattttgtgattccagTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTT
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G37480.1 (Glycine max), 3'ss of exon 3
----ttggaatttaattttctcttttctctcccacagtgttctgttaaactatttaataatagcatctgccagctaggacgctgatgtggcagtttctttgcagTGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTT
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acaaaatcaatataattacaaaaatggcattgca-aatttcatgccagctaagctgttgacgaggcaatttattgatcttttttattttgtgattttc---cagTGAATGCCGATGAATGTTTGATGACCCGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543461|gb|CF511693.1|CF511693EST: TCTCGTCCACAACCCTGAAATAGCTCTCGTTCAGGCTCGTTGGAAATTTG TGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATT
genomic: TCTCGTCCACAACCCTGAAATAGCTCTCGTTCAGGCTCGTTGGAAATTCGgtactttttt ... ttctttgcagTGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatttaataatagcatctgccagctaggacgctgatgtggcagtttctttgcagTGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTT
cgctgat putative branch site (score: 4)
tttctttgc putative PPT
taataata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggaatttaattttctcttttctctcccacagtgttctgttaaactatttaataatagcatctgccagctaggacgctgatgtggcagtttctttgcagTGAACTCGGACGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt