Sequence
atgc intronic sequence ATGC exonic sequence...ctctcagcttatgtacatgagagggtattattttccagtttaaaattttattctggatctataaggtgattcatagatgcttgaaattctatccatgcagGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G37570.2 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------------ctctcagcttatgtacatg-agagggtattattttccagtttaaaattttattctggatctataaggtgattc----at-agatgcttgaaattctatccatgcagGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTG
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gtagtacttcaattttatctgatggtcaaggctgtgattatgcattttgactaaattattattattattattattattatctttttaaggggtggggggtggaatttcagtggttgaatacaaaatatgg-cctttgtgttgtttttgcgatgacatgctttatacatgataccttcagGTACTAGCTGACACCATTGATTTGCCATGCCGAATTGCTAAGGGCTGTAAATATTGTTCAAGAGATGATGCCTCCTCATGTCTTGTTCGATTTGGACTTG
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G34890.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------ctctcagcttatgtacatgagagggtattattttccagtttaa--aattttattctggat-----ctataaggtgattc----atag-atgcttgaaattctatccatgcagGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTG
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gtaatacttgaattctatgtgatggtcaaggctgtgattatgcattttgactatattattattatctttttaatgggagtggtggtggtggaggaatttcagtggtttaatacaagataaggtctttgtgttgtttttgtgatgacatgctttattcatgatatattcagGTACTAGCTGACACCATTGATTTGCCTTGTCGAATTGCTAAGGGCTGTAAATATTGTTCAAGAGATGATGCCTCCTCATGTCTTGTTCGATTTGGACTTG
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 4
------------------------------ctctcagcttatgtacatgagagggtatt-attttccagtttaaaattttattctggatctataaggtgattcataga---tgcttgaaattctatccatgcagGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTG
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gtaaggctctactttcctttggctttttaaggctatgattatgcatgttaacttgtttttgtttgctagtttagtacatgcaattgtatttaagttgttttttaaatgacttgctttatattcaatattttcagGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttattctggatctataaggtgattcatagatgcttgaaattctatccatgcagGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTG
ttctatcc CT-rich tract
aaattctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctctcagcttatgtacatgagagggtattattttccagtttaaaattttattctggatctataaggtgattcatagatgcttgaaattctatccatgcagGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - gcttatg
- - - - - - - -catgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga