1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcactagtaattttcacttggcattgtgatgaattaagactgaatgaatatgttgatttctctggatatggattttcatggatcacgtggaaacctcagCTGTCCATTTTGTCGGAAG
species | Vitis vinifera |
transcript | Vv08s0007g03250.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGEST: gi|349822639|gb|FQ412903.1|FQ412903
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGEST: gi|30253209|gb|CB970760.1|CB970760
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGEST: gi|351019188|gb|FQ429348.1|FQ429348
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGEST: gi|349829498|gb|FQ420030.1|FQ420030
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGEST: gi|110413628|gb|EC979423.1|EC979423
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGEST: gi|110423056|gb|EC989391.1|EC989391
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: ATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGEST: gi|28959489|gb|CB339745.1|CB339745
genomic: ATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGEST: gi|71855235|gb|DT004290.1|DT004290
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: AAAGTGGGCCCTCGACCAGAGAAGCCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAGGEST: gi|349811972|gb|FQ410769.1|FQ410769
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAGG
EST: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
tgaatatgttgatttctctggatatggattttcatggatcacgtggaaacctcagCTGTCCATTTTGTCGGAAG
tgttgat putative branch site (score: 4)
attttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcactagtaattttcacttggcattgtgatgaattaagactgaatgaatatgttgatttctctggatatggattttcatggatcacgtggaaacctcagCTGTCCATTTTGTCGGAAG
ctcacta
- - - - - - - -cacttgg
- - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgg