Sequence
atgc intronic sequence ATGC exonic sequence...ttatgcaagatcttgtaccctttttggtcaattttcttggttttgaaacatggtttcttctcatggcttgtgattttatttttttttggtttttttgcagCTTTCCTTGCCCATGGTATCGAAAGGTTCCTCTTTCTTTGGCACTTAGCCCTAGAATAATCTCAGAGGTTGCCCGATTTAAGCCTGATATAATACATGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G42540.1 (Glycine max), 3'ss of exon 3
ttatgcaagatcttgtaccctttttggtcaattttcttggttttgaaacatggtttcttctcatggcttgtgattttatttttttttgg---tttttt-----tgcagCTTTCCTTGCCCATGGTATCGAAAGGTTCCTCTTTCTTTGGCACTTAGCCCTAGAATAATCTCAGAGGTTGCCCGATTTAAGCCTGATATAATACATGCA
||| | | || | | |||||| | | | | | || || ||||| |||| | || ||||||||||| ||||| | ||||| ||||| || || || ||||||||||| || |||||||| || ||||| ||||| ||||||||||| ||||||||||||
-------tagcctttttgcattgtctatgtattttccaacaactagcatgcccatatgttttata-ctaacaattttcttttataccaaaaacaattgagaaatgcagCTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCGGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCA
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G14200.1 (Glycine max), 3'ss of exon 3
ttatgcaagatcttgtaccctttttggtcaattttcttggttttg-aaacatggtttcttctcatggcttgtgattttatttttttttggtttttttgcagCTTTCCTTGCCCATGGTATCGAAAGGTTCCTCTTTCTTTGGCACTTAGCCCTAGAATAATCTCAGAGGTTGCCCGATTTAAGCCTGATATAATACATGCA
| || | | || | | ||| | | | ||| | || ||| | ||| | | | | | |||| | |||||||| ||||| || ||||||| |||||| ||||| |||||||||||||| || |||||||| || | |||||| ||||||||||| ||||||||||||
tattgtacttgccaatatcttctttaaact-tatgattgctaccacaaccattgcttcgtacgaatgatcttcatttaaacaaaaacattgaaaaatgcagCTTCCCTTGTCCCTGGTATCAAAAGGTGCCTCTCTCTTTGGCACTTAGTCCAAGAATAATTTCTGCGGTTGCTGAGTTTAAGCCTGACATAATACATGCA
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G17680.1 (Glycine max), 3'ss of exon 2
ttatgcaagatcttgtaccctttttggtcaattttcttggttttgaaacatggtttcttctcatggcttgtgattttatttttttttgg---tttttt-----tgcagCTTTCCTTGCCCATGGTATCGAAAGGTTCCTCTTTCTTTGGCACTTAGCCCTAGAATAATCTCAGAGGTTGCCCGATTTAAGCCTGATATAATACATGCA
|| || ||| | | | || |||||| | | | | | || || ||||| |||| | || ||||||||||| ||||| | ||||| ||||| || || || ||||||||||| || |||||||| || ||||| || || ||||||||||| ||||||||||||
------tagcctttttacattgtcta-tctattttccaacaactagcatgcccatatgttttata-ctaaaaattttcttttataccaaaaacaattgagaaatgcagCTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCGGAGGTAGCTCGGTTTAAGCCTGACATAATACATGCA
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G27840.1 (Glycine max), 3'ss of exon 3
ttatgcaagatcttgtaccctttttggtcaattttcttggttttgaaa--catggtttcttctcatggcttgtgattttatttttttttggtttttttgcagCTTTCCTTGCCCATGGTATCGAAAGGTTCCTCTTTCTTTGGCACTTAGCCCTAGAATAATCTCAGAGGTTGCCCGATTTAAGCCTGATATAATACATGCA
| || || | ||| | ||| | || | | | | | | ||| | ||| | | | | | |||| | | |||||||| ||||| || ||||||| |||||| || || |||||||||||||| || |||||||| || | ||||| ||||||||||| ||||||||||||
tattgtaattgccagtatgttctttaa--agttatggttgctaccacagccattgcttcgtactaatgatcttcatttaaacaaaaaacaatgaaaatgcagCTTCCCTTGTCCCTGGTATCAAAAGGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCTGCTGTTGCTGAGTTTAAGCCTGACATAATACATGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacatggtttcttctcatggcttgtgattttatttttttttggtttttttgcagCTTTCCTTGCCCATGGTATCGAAAGGTTCCTCTTTCTTTGGCACTTAGCCCTAGAATAATCTCAGAGGTTGCCCGATTTAAGCCTGATATAATACATGCA
ttttatttttttttgg CT-rich tract
ttgtgattttattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatgcaagatcttgtaccctttttggtcaattttcttggttttgaaacatggtttcttctcatggcttgtgattttatttttttttggtttttttgcagCTTTCCTTGCCCATGGTATCGAAAGGTTCCTCTTTCTTTGGCACTTAGCCCTAGAATAATCTCAGAGGTTGCCCGATTTAAGCCTGATATAATACATGCA
-tatgcaa
- - - - - - - - -ccctttt
- - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - gaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatggc