Sequence
atgc intronic sequence ATGC exonic sequence...tagttaaagctaacatatgaaacacatcatccttcaaatgcctgaatattattaaacatcctatcctaaactcatcatgacttcccaatattgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATTGCACGGCACCCTAACAGGCCGACTTTTCTCGATCACGTGTTTAACATTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G42280.1 (Glycine max), 3'ss of exon 2
--tagttaaagctaacatatgaaacacatcatccttcaaatgcctgaatattattaaacatcctatcctaaactcatcatgacttcccaatattgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATTGCACGGCACCCTAACAGGCCGACTTTTCTCGATCACGTGTTTAACATTA
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acttttttgtgttattttaacttttcttcccagtccctatagttttaacagtaaaattggtaaaagtctcatcctttcactgct-cgcattattattt-cagGCTTTAAAGGATCTGTATACGCATCTGACTCCTATTCAGCGGGTCAACATCGCACGGCACCCTAACAGGCCAACTTTCCTTGATCATGTGTTTAACATAA
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G42310.2 (Glycine max), 3'ss of exon 2
--tagttaaagctaacatatgaaacacatcatccttcaaatgcctgaatattattaaacatcctatcctaaactcatcatgacttcccaatattgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATTGCACGGCACCCTAACAGGCCGACTTTTCTCGATCACGTGTTTAACATTA
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acttttttgtgttattttaacttttcctcccaatccctaaaatttgaacagtaaaattggtaaaagtctcatcctttcactgct-cgcattattattt-cagGCTTTAAAGGATCTGTATACGCATCTGACTCCTATTCAGCGGGTCAACATCGCACGGCACCCTAACAGGCCAACTTTCCTTGATCATGTCTTTAACATAA
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G42300.1 (Glycine max), 3'ss of exon 2
--tagttaaagctaacatatgaaacacatcatccttcaaatgcctgaatattattaaacatcctatcctaaactcatcatgacttcccaatattgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATTGCACGGCACCCTAACAGGCCGACTTTTCTCGATCACGTGTTTAACATTA
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tactttttttgttattttaacttttcctcccaatccctaaaatttgaacagtaaaattggtaaaagtctcatcctttcactgct-cgcattattattt-cagGCTTTAAAGGATCTGTATACGCATCTGACTCCTATTCAGCGGGTCAACATCGCACGGCACCCTAACAGGCCAACTTTCCTTGATCATGTCTTTAACATAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689389|gb|EC938332.1|EC938332EST: GTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG GCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATT
genomic: GTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAGgtttaataaa ... ttgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATT
EST:
gi|161715758|gb|FC066162.1|FC066162EST: GTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG GCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATT
genomic: GTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAGgtttaataaa ... ttgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atattattaaacatcctatcctaaactcatcatgacttcccaatattgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATTGCACGGCACCCTAACAGGCCGACTTTTCTCGATCACGTGTTTAACATTA
tcctaaa putative branch site (score: 2)
ttgttttc putative PPT
aatattgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagttaaagctaacatatgaaacacatcatccttcaaatgcctgaatattattaaacatcctatcctaaactcatcatgacttcccaatattgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATTGCACGGCACCCTAACAGGCCGACTTTTCTCGATCACGTGTTTAACATTA
- - -aaagctaa
- - - - - - - - - gaaacac
- - - - - - - - - - - - - tcatcct
- - - - - - - - - - - - - - - - - -aaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttccca