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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattcggtgtcaccaactttttagaatgctttattatatggtctcttccctttattgtttcattcatagtactttttaagctaacctcttgttacttattgaaatccagATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAG

Basic information

species Vitis vinifera
transcript Vv08s0007g01650.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G27000.1 (Glycine max), 3'ss of exon 2
gtaagcattcggtgtcaccaactttttagaatgctttattatatggtct-cttccctttattgtttcattcatagtactttttaagctaacctcttgt-tacttattgaaatccagATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAG
              | |        |     | |  |||||  | |||| ||      ||   |||  |   || | || |||  |||||   || |  |  | ||  |  | |||||||||||||||||||| || || || || ||||||||||| ||||| ||||| |||||||| ||||| || |||||||| || |  ||
--------------tgattgggaaatagttttacactattagttagtctactaatgcataaccttttttctctatttctattt--gctaattcctagaatcttcatcaacttgcagATATGTGATATGGTTGCAGTGGCAAAAATAATGAATGCCACCCTTGTGCTTCCCTCTCTTGACCATGATTCATTTTGGACTGATCCAAG

upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G14950.1 (Glycine max), 3'ss of exon 2
gtaagcattcggtgtcaccaactttttagaatgctttattatatggtctcttccctttattgtttcattcatagtactttttaagctaacctcttgt-tacttattgaaatccagATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAG
        |   ||| |  ||   | |   |   || ||    | ||   |  || || ||  |  |||       || |||  |||||   || |  | || || ||  | |||||||| ||||||||||| || || || || ||||||||||| ||||| ||||||||||| || ||||| || |||||||| || |  ||
-----ggatgaatgtga--aatagtcttacactgttcatctgttagtggataacccttttttctctattt------ctgttt--gctaattcctagaatcctcatcgacttgcagATATGCGATATGGTTGCAGTGGCAAAAATAATGAATGCCACCCTTGTCCTTCCTTCTCTAGACCATGATTCATTTTGGACTGATCCAAG

upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G54100.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagcattcggtgtcaccaactttttagaatgctttattatatggtctcttccctttattgtttcattcatagtactttttaagctaacctcttgttacttattgaaatccagATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAG
|| ||  | |    |||  |   | |||||  |  ||  | |  | | |||  || |  |    |  ||    ||||| ||          | ||| |  | |   | || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||| ||||| || || ||||| |||| |||
gtgagtttact---tcaaaaggatattagagggtattgatctccgttttct--ccatagtcaagtgttttgatgtactattc-------tttgttggttttgaccaatatgcagATATGTGACATGGTCGCTGTTGCCAAGATTATGAATGCAACTCTTGTTCTTCCTCTGCTTGACCATGAATCTTTCTGGACTGACCCGAG

upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G37980.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagcattcggtgtcaccaactttttagaatgctttattatatggtctcttccctttattgtttcattcatagtactttttaagctaacctcttg--ttacttattgaaatccagATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAG
                               ||  ||  | |     |  ||  |   |   ||| ||   | ||  || |||   |    | |||  || |  | | |||| ||||||||||| ||||||||||  || |||||||||||||| |||||||||||||||   || || ||||| || || ||||| |||| |||
------------------------------gtgagttcatgtccaagcattttaca--aagatttgatctctggtgtttcttaccttcctttattgtgtttccaaatcaaatgcagATATGTGACATGGTTGCTGCAGCAAAGATTATGAATGCGACTCTTGTTCTTCCTCTACTCGACCATGAATCTTTCTGGACTGACCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttcattcatagtactttttaagctaacctcttgttacttattgaaatccagATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAG
                        agctaac  putative branch site (score: 2)
           atagtactttttaa  TA-rich tract