1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatattgaaccaacttggagacataaaattttgttcagtgaggacaattgtctctcaatttgcttttaactgattattgtgaatgcgtgcgtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGAGTTGCTGAGCCTCAACATACTCAAACCTATCCCGCAGG
species | Vitis vinifera |
transcript | Vv08s0007g01340.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGGACCTAAACGAGCCTGGCATGGGEST: gi|110372149|gb|EC936298.1|EC936298
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGGATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|110718881|gb|EE096218.1|EE096218
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGGATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|110723305|gb|EE100463.1|EE100463
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAAGAGATTTTGTCGAAATTGGATGGTTCATCTGATAAACCCACCAG TTCAGAAACTAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|110356854|gb|EC919981.1|EC919981
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGGATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|351023717|gb|FQ448268.1|FQ448268
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|110688830|gb|EE067830.1|EE067830
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGGATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|352785766|gb|FQ475769.1|FQ475769
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGGATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|110718248|gb|EE094865.1|EE094865
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGGATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|110731453|gb|EE105880.1|EE105880
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGGATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|37187578|gb|CF606931.1|CF606931
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|351025561|gb|FQ437049.1|FQ437049
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGEST: gi|349830477|gb|FQ416775.1|FQ416775
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
EST: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAG TTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
genomic: GATAAGGAGATTTTGTCGAAATTGAATGGTTCATCTGATAAACCCACCAGgtaataaact ... gtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGG
aattgtctctcaatttgcttttaactgattattgtgaatgcgtgcgtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGAGTTGCTGAGCCTCAACATACTCAAACCTATCCCGCAGG
ttttaactgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattgaaccaacttggagacataaaattttgttcagtgaggacaattgtctctcaatttgcttttaactgattattgtgaatgcgtgcgtgtttgcagTTCAGAAACAAGACCAGGACAGAGACAGAACCTAAACGAGCCTGGCATGGGAGTTGCTGAGCCTCAACATACTCAAACCTATCCCGCAGG
- - - gaaccaa
- - - - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - aggacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgcg