Sequence
atgc intronic sequence ATGC exonic sequence...gggaattttagtgacgggtattctttatgctgtatatcctgtgcaaaagaggcattgcataagatctaattccatttgtcatatgtattacttggaacagAATCTTCTTCTCTCCACAAATGACAACAATTCAGTCCTGAAGATTGCTGATTTTGGATTTGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G24510.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------------------------gggaattttagtgacgggtattctttatgctgtatatcctgtgca---------aaagaggcattgc-ataagatctaattccatttgtcatatgtattacttggaacagAATCTTCTTCTCTCCACAAATGACAACAATTCAGTCCTGAAGATTGCTGATTTTGGATTTGCAAG
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gtttttattttgattctattccttacaacataaatgcctatcaattggtttatgtctcattagttcagagttctagctgatcccattccacataaaacttaatctttgtatgaagattgaaggttgctttgttattttatccaagtatggtaatcac-tatcgtccttgaaacagAACCTTCTTCTCTCCCGAAATGATGAGAAGTCAGTGCTGAAGATTGCTGACTTTGGATTTGCAAG
upper sequence: Vv08s0007g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G37840.1 (Arabidopsis thaliana), 3'ss of exon 3
gggaattttagtgacgggtattct----ttatgctgtatatcctgtgcaaaagaggcattgcataagatctaattccatttgtcatatgtattacttggaacagAATCTTCTTCTCTCCACAAATGACAACAATTCAGTCCTGAAGATTGCTGATTTTGGATTTGCAAG
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--aaaacatgtttttggatatgttggggtttccttgtccaagtcttggagattccatctttgttgaaatttaattcttaaggttctttcgttt--ttgaaacagAATCTTCTTCTATCCACAAATGAAAATGATGCAGATCTGAAGATTGCTGATTTTGGATTTGCAAG
upper sequence: Vv08s0007g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G53930.1 (Arabidopsis thaliana), 3'ss of exon 3
-gggaat--tttagtgacgggtattctttatgctgtatatcctgtgcaaaagaggcattgcataagatctaattccatttgtca----tatgtattacttggaacagAATCTTCTTCTCTCCACAAATGACAACAATTCAGTCCTGAAGATTGCTGATTTTGGATTTGCAAG
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aggatatggtttctttccgagaaattctttcactagct-------gagataaagattttttctgaaattgaaattcgattgctaaggttctttcgttcttgaaacagAATCTTCTTCTATCCACAGATGATAATGATGCAGCTCTGAAGATTGCCGATTTTGGATTTGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagaggcattgcataagatctaattccatttgtcatatgtattacttggaacagAATCTTCTTCTCTCCACAAATGACAACAATTCAGTCCTGAAGATTGCTGATTTTGGATTTGCAAG
atctaat putative branch site (score: 3)
atatgtatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gggaattttagtgacgggtattctttatgctgtatatcctgtgcaaaagaggcattgcataagatctaattccatttgtcatatgtattacttggaacagAATCTTCTTCTCTCCACAAATGACAACAATTCAGTCCTGAAGATTGCTGATTTTGGATTTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - -tatgctg
- - - - - - - - - - - - - - - - - - -cctgtgc
- - - - - - - - - - - - - - - - - - - - - - aaaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - cattgca