Sequence
atgc intronic sequence ATGC exonic sequence...ctcatgttttggttctaaagaaagaaggaaatttaatcgtttctttcctttgaaagggagagaatggattgcctgaaggaattccacatttgttttgcagCTTGGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G40770.1 (Glycine max), 3'ss of exon 3
--ctcatgtttt-ggttctaaagaaagaaggaaatttaatcgtttctttcctttgaaagggagagaatggattgcctgaaggaattccacatttgttttgcagCTTGGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGC
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tgcaaactttttcaagtttctatcaacatg--agcttggtagagttttgagggtcagaggaggaaaagaacctaagataaaaaaggtt-tgtttgttatgcagCTTTTCAGATCTTCAAAATCCACAAGGAGATCTTGATGGGAAAGCATGTGCAGCTGTTGGACAGAGTAGTCTCATGGCTCTCTATGATATCATGTTTAGT
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G24530.1 (Glycine max), 3'ss of exon 3
ctcatgttttggttctaaagaaagaaggaaatttaatcgtttctttcct-ttgaa---agggagagaatggattgcctgaagga-attccacatttgtttt---gcagCTTGGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGC
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--------aaggagttaatgcaaatttgtttcttttcaattaatttgaggttgaatttagggtgagaatgacgagccttaaagacattgtttacttgttgtgatgcagCTTTTCTGATCTTCAAAAGCCACAAGAAGAGCTTGATGGAAAAGCATGTGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGC
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G12240.1 (Glycine max), 3'ss of exon 3
ctcatgttttggttctaaagaaagaaggaaatttaatcgtttct--ttcctttgaa---------agggagagaatggattgcctgaagga-attccacatttgt---tt----tgcagCTTGGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGC
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-------------------agttaatgcaaatttgtttctttccgattagtttgaggttcaattcagggtgagaatgactagccttaaagacattgtttacttgtgaattgtgatgcagCTTTTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctttgaaagggagagaatggattgcctgaaggaattccacatttgttttgcagCTTGGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGC
tttgtttt CT-rich tract
atttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcatgttttggttctaaagaaagaaggaaatttaatcgtttctttcctttgaaagggagagaatggattgcctgaaggaattccacatttgttttgcagCTTGGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
ctcatgt
- - - - - - - - aaagaaa
- - - - - - - - - - - - aaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacatt