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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattttctttctgtcatattaatcaggttatgtatttattttcaatatgttcgctttggtattgaatggcctgaatcatattatccatatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTG

Basic information

species Vitis vinifera
transcript Vv08s0007g00530.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G068244_T01 (Zea mays), 3'ss of exon 3
gtgagattttctttctgtcatattaatcaggttatgtatttattttcaatatgttcgctttggtat-tgaatggcctga--atcat--att---atccatatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTG
||  | | ||  |||||     |   |||  || ||  ||| ||   |     |    ||  | |  | ||||   | |  ||  |  |||   | | |||||  |||| ||| |||| |||||||||||||||||| |||| || ||||||||||||||| | |  ||||||||  |||||||| |||| ||||| ||||| |||
gtatg-tgttaattctgctcagtgtttcactttctg-gttttttggtagctcatatttttcagaacgtaaatgaaataatgattgttaatttggacctatattggcagCTAAAGCTGCTGGAGTGAAGCATATTGTGCTGGTGGGATCTATGGGAGGAACAAATCCTAACCATCCGCTGAACAGCATGGGTAATGGCAATATACTG

upper sequence: Vv08s0007g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G39930.1 (Glycine max), 3'ss of exon 3
gtgagattttctttctgtcatattaatcaggttatgtatttattttcaa---tatgttcgctt-tggtattgaatggcctgaatcatattatccatatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTG
|||||| | | ||||| || |   |      | ||  |||  | | |||   |||    |||| || |||||||        || || || |  || |  ||||| ||  |||| ||||||||||| |||||||| || ||||||||||| |||||||| || |||||||| |||||||||||||| ||||||||||| |||
gtgagaatctatttct-tctttcca--tgaatcatagattgctatacaaacttatacatgcttgtgatattgaa--------attattttctatatgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG

upper sequence: Vv08s0007g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G15960.1 (Glycine max), 3'ss of exon 3
gtgagattttctttct--gtcatattaatcaggttatgtatttattttcaatatgttcgctttggtattgaatggcctgaatcatattatccatatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTG
|||||| | | |||||   |   ||||||||   ||  | || | |   ||  |   |    | || ||        ||  | |||| ||  ||||  ||||| ||  |||| ||||||||||| |||||||| || ||||||||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||  ||
gtgagaatctatttcttctttccattaatca---tagat-ttcaatacaaacttacgcatgcttgtgttattgaaattgttttatat-atatatatgaacagCCAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACGGACCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATATTG

upper sequence: Vv08s0007g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G37660.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagattttctttctgtcatattaatcaggttatgtatttattttcaatatgttc-gctttggtattgaatggcctgaatcatattatccatatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTG
                 |  |||| ||||       | | | || |   | ||||  ||   ||| ||||      || ||  | |  |   |  | ||||| ||  |||||||||| ||||| ||||| ||||||||||| |||||||||||| || | || || ||  | || ||  | || ||||  || || |||
---------------gtttgtattcatca-------tctctgttgtatgtgtgtttagcggaggtgttgatgatgatggat--tgtcgtttgttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349811666|gb|FQ409663.1|FQ409663
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|349810529|gb|FQ402772.1|FQ402772
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCGTATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|351016336|gb|FQ446196.1|FQ446196
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCGTATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|349821239|gb|FQ404371.1|FQ404371
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|110700744|gb|EE077667.1|EE077667
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|110385557|gb|EC950093.1|EC950093
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|352786365|gb|FQ478974.1|FQ478974
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|45771772|gb|CN007624.1|CN007624
EST:     GTTGACTGGA-T-GGCAAAA-AATTAAATAGATG-TG                         CAAAAA-TGCAGGAGTGAAGCATATT-TGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|351023663|gb|FQ448214.1|FQ448214
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|352790186|gb|FQ481385.1|FQ481385
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|351051751|gb|FQ449565.1|FQ449565
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|351054211|gb|FQ450293.1|FQ450293
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|351028714|gb|FQ433144.1|FQ433144
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|110692043|gb|EE070833.1|EE070833
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
EST: gi|351055225|gb|FQ440564.1|FQ440564
EST:     GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG                         CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA
genomic: GTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTGgtgagatttt ... atatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatatgttcgctttggtattgaatggcctgaatcatattatccatatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTG
                                    atattatccatattta  TA-rich tract