1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaggtatcaagggttcttgcgttggtttagtccaacgaatttaattttcatatttaatcagtggaggccttatgatttaacattttggacattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTTTTGCTGGAAACTCTCAAAAG
species | Vitis vinifera |
transcript | Vv08s0007g00290.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTG ATTTCTTTGACTGGAATAAAGTCAAGCTTCGGTATTGTGATGGTGCTTCTTEST: gi|161709860|gb|FC058920.1|FC058920
genomic: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaatttta ... cattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT
EST: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTG ATTTCTTTGACTGGAATAAAGTCAAGCTTCGGTATTGTGATGGTGCTTCTTEST: gi|161714990|gb|FC062719.1|FC062719
genomic: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaatttta ... cattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT
EST: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTG ATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTTEST: gi|161714186|gb|FC062931.1|FC062931
genomic: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaatttta ... cattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT
EST: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTG ATTTCTTTGACTGGAATAAAGTCAAGCTTCGGTATTGTGATGGTGCTTCTT
genomic: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaatttta ... cattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT
ttttcatatttaatcagtggaggccttatgatttaacattttggacattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTTTTGCTGGAAACTCTCAAAAG
atttaac putative branch site (score: 3)
ttatgatttaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaggtatcaagggttcttgcgttggtttagtccaacgaatttaattttcatatttaatcagtggaggccttatgatttaacattttggacattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTTTTGCTGGAAACTCTCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - ttcttgc
- - - - - - - - - - - - - - - gtccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttatg