1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtttcttcatatgagctctgatggtcttttttgaatttggcatttgaactgtaatagagaaattgatgttgggttataattgaaacttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTTACTATGGCCATTCTGATTGCCTCCAAGCTATTCTTTCTGCTGCCCATT
species | Vitis vinifera |
transcript | Vv08s0007g00200.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAAT ATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTEST: gi|71855125|gb|DT004180.1|DT004180
genomic: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAATgtatgtttct ... cttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCT
EST: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAAT ATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTEST: gi|110413263|gb|EC979042.1|EC979042
genomic: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAATgtatgtttct ... cttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCT
EST: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAAT ATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTEST: gi|27583732|gb|CB006427.1|CB006427
genomic: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAATgtatgtttct ... cttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCT
EST: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAAT ATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTEST: gi|161721280|gb|FC070033.1|FC070033
genomic: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAATgtatgtttct ... cttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCT
EST: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAAT ATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTEST: gi|110412439|gb|EC978189.1|EC978189
genomic: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAATgtatgtttct ... cttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCT
EST: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAAT ATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTEST: gi|30125105|gb|CB910444.1|CB910444
genomic: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAATgtatgtttct ... cttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCT
EST: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAAT ATTTTGATGTTTGATTCTCGACATGGAAGAACCTGCTTGCATTATGCTGCT
genomic: TGCATGGAAAGATATATTGCGTGCAAAAGCTTCTTGAAGCAGGAGCGAATgtatgtttct ... cttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCT
catttgaactgtaatagagaaattgatgttgggttataattgaaacttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTTACTATGGCCATTCTGATTGCCTCCAAGCTATTCTTTCTGCTGCCCATT
aattgat putative branch site (score: 4)
cttctttc putative PPT
ttataattgaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcttcatatgagctctgatggtcttttttgaatttggcatttgaactgtaatagagaaattgatgttgggttataattgaaacttctttcagATTTTGATGTTTGATTCTCGTCATGGAAGAACCTGCTTGCATTATGCTGCTTACTATGGCCATTCTGATTGCCTCCAAGCTATTCTTTCTGCTGCCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC