Sequence
atgc intronic sequence ATGC exonic sequencegttgaaatttctgggcatgctaaatttatattgaaaagcttaatacaaaattgttattaagaccatttgttgaacattgcagTTAGCAGGAGTGCAGTGTGCTGGCAACCCACACTTTTGGGTAAATGAGGATGGATCATACCAGGAAGAGGGACAGAAGAATACAAAAGGGTATATCTGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G25990.1 (Glycine max), 3'ss of exon 4
--------------------------------------------gttgaaatttctgggcatgctaaatttatattgaaaagcttaatacaaaattgttattaagaccatttgttgaacattgcagTTAGCAGGAGTGCAGTGTGCTGGCAACCCACACTTTTGGGTAAATGAGGATGGATCATACCAGGAAGAGGGACAGAAGAATACAAAAGGGTATATCTGGG
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gttggaaattcaattcaagatattacttaaaaaagaatagaaaagtttaaaaggctccatgatctatcttaatttttctttttgttgttaaaaataaataaaaggttcttgttttggttggc-cagTTGGCAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAAAAAAATACAAAAGGGTGTATCTGGG
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G38890.1 (Glycine max), 3'ss of exon 4
-------------gttgaaatttctgggcatgctaaatttatattgaaaagcttaatacaaaattgttattaagaccatttgttgaacattg----cagTTAGCAGGAGTGCAGTGTGCTGGCAACCCACACTTTTGGGTAAATGAGGATGGATCATACCAGGAAGAGGGACAGAAGAATACAAAAGGGTATATCTGGG
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gtcaaaaattcatattgagaggctctctcttaataaccatatcttgtttattgtgaaacagaatttttgaaagaatcctgttttggttgttgtgtgcagTTGGCAGGAGTTCAATGTGCTGGCAACCCACATTTTTGGGTCAATGAGGATGGTTCCTACCAAGAAGAGGGGCAGAAGAATACAAGGGGATATATATGGG
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G06910.1 (Glycine max), 3'ss of exon 5
gttgaaatttctgggcatgctaaatttatattgaaaagcttaatacaaaattgttattaagaccatttgttgaacattgcagTTAGCAGGAGTGCAGTGTGCTGGCAACCCACACTTTTGGGTAAATGAGGATGGATCATACCAGGAAGAGGGACAGAAGAATACAAAAGGGTATATCTGGG-----
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-------------------------------------------------------------gtcttgttttggttgg-gcagttagcgggagttcagtgagCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAGAAAAATACAAAATGGTGTATTTGGGGAAAG
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G06410.1 (Glycine max), 3'ss of exon 4
-------------gttgaaatttctgggcatgctaa--atttatattgaaaagcttaatacaaaattgttattaagaccatttgttgaacat-tgcagTTAGCAGGAGTGCAGTGTGCTGGCAACCCACACTTTTGGGTAAATGAGGATGGATCATACCAGGAAGAGGGACAGAAGAATACAAAAGGGTATATCTGGG
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gttggaaattcatattgaaaggctccctcttaataaccatatatattgtttattgtgaaacagaattgttgaaaggatcctgttttggttgtgtgcagTTGGCAGGAGTTCAGTGTGCCGGCAACCCACATTTTTGGGTCAATGATGATGGTTCCTACCAAGAGGAGGGGCAGAGGAATACAAGGGGTTATATATGGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atattgaaaagcttaatacaaaattgttattaagaccatttgttgaacattgcagTTAGCAGGAGTGCAGTGTGCTGGCAACCCACACTTTTGGGTAAATGAGGATGGATCATACCAGGAAGAGGGACAGAAGAATACAAAAGGGTATATCTGGG
gcttaat putative branch site (score: 4)
aaaagcttaatacaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgaaatttctgggcatgctaaatttatattgaaaagcttaatacaaaattgttattaagaccatttgttgaacattgcagTTAGCAGGAGTGCAGTGTGCTGGCAACCCACACTTTTGGGTAAATGAGGATGGATCATACCAGGAAGAGGGACAGAAGAATACAAAAGGGTATATCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG