Sequence
atgc intronic sequence ATGC exonic sequencegttcttgattcaacccattgggttttttcttttctagtttttgtgctatttccatggtttcttgacactggttgcttctgcagGCTCGCTTTTTCTTTCAACAGCTTATATCAGGGGTCAGCTATTGTCATGCAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G39020.2 (Glycine max), 3'ss of exon 3
gttcttgattcaacccattgggttttttcttttctagtttttgtgctatttccatggtttcttgacactggttgc--ttctgcagGCTCGCTTTTTCTTTCAACAGCTTATATCAGGGGTCAGCTATTGTCATGCAATG
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gttctt-atacaatttgtttacttttgcttgtgctagctct----ctatttcctgtgtaactattaacccattgtcatgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G06250.1 (Glycine max), 3'ss of exon 3
gttcttgattcaacccattgggttttttcttttctagtttttgtgctatttccatggtttcttgacactggttgcttctgcagGCTCGCTTTTTCTTTCAACAGCTTATATCAGGGGTCAGCTATTGTCATGCAATG
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gttctt-atacaatttgtttactttttcttgtgctaggtttc-tatttcctgtgtaactattaacccattgatatgtc-acagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGTCATGCAATG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 3
gttcttgattcaacccattgggttttttcttttctagtt--------tttgtgctatttccatggtttcttgacactggttgcttc--tgcagGCTCGCTTTTTCTTTCAACAGCTTATATCAGGGGTCAGCTATTGTCATGCAATG
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gttctt-atttaatttgtttacttattctacacctgaatgctataagtttgtacttattctacgctagtttgtaacccgttgttatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCTGGGGTCAGCTATTGCCATGCTATG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G09460.1 (Glycine max), 3'ss of exon 3
----------------gttcttgattcaacccattgggttttttcttttctagtttttgtgctatttccatggtttcttgacactggttgcttc--tgcagGCTCGCTTTTTCTTTCAACAGCTTATATCAGGGGTCAGCTATTGTCATGCAATG
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gttcttatttaatttgtttacttgttctacacctgaacgttataagtttgtacttcgaatttgttccctacgcaagtttgtaacctgttgttatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCTATG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G50500.1 (Arabidopsis thaliana), 3'ss of exon 3
gttcttgattcaacccattgggttttttcttttctagtttttgtgctatttccatggtttcttgacactggttgcttctgcagGCTCGCTTTTTCTTTCAACAGCTTATATCAGGGGTCAGCTATTGTCATGCAATG
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gtttggattctgatttatcg----tactgtgttgtggtattgatg-tgtgactactgatctttaagttttttta--tgtatagGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCATGCAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttctagtttttgtgctatttccatggtttcttgacactggttgcttctgcagGCTCGCTTTTTCTTTCAACAGCTTATATCAGGGGTCAGCTATTGTCATGCAATG
tcttgac putative branch site (score: 3)
ttgcttct putative PPT
tagttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcttgattcaacccattgggttttttcttttctagtttttgtgctatttccatggtttcttgacactggttgcttctgcagGCTCGCTTTTTCTTTCAACAGCTTATATCAGGGGTCAGCTATTGTCATGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT