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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC

Basic information

species Vitis vinifera
transcript Vv07s0191g00060.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 3
gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttattgatgtatcttaa---gcgtgtttg-acagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
   | ||||  ||   | | | ||        |||   || | ||   | | | | | |    |  || |    |  |||||| |||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||| || || ||  | || || ||||  ||||| |
--gtaatttctttggcaatttgctccatgattcttcaactgtcttgctatttaatgagttggatgactaagtttgtctgtttgtacagGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 3
gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
   | || | || |    |||  |       | || |  ||   |||   | |  | || |  |||||    | | |||  ||||| |||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || |||||||||||||| || ||  | || || ||||  ||||| |
--gtaatatcgtgaggcctctgatgtttcctaattactgttacctagtcttaagatgttaacatatctctctcctttttctcagGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 3
gtatgattttgttactatt--cttcttagg--ataacttgccctttgttaggaatgatttattgatgtatcttaagcg--tgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
|||  | ||||  |  | |   |||||     || |||    ||   ||   | | |  ||| | |||    |       |||||  |||||||||||||||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| |||||  ||||  | || || || |  |||||||
gta-aactttgggatgacttatttcttgatccatgactcttgctgatttcatacttaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
----------------------------------gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttat-tgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
                                  |  ||| ||  ||  |  ||   | |   |  ||       |  |   ||  ||   | |||| | | |      |||||  |||||||||||||||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| |||||  ||||  | || || || |  |||||||
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatcca-tgactcttgctgatttcatacttaaaaatataggtgtgatatgtttc---tttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G054136_T05 (Zea mays), 3'ss of exon 3
-------------------gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttat-tgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
                   |  ||| ||  ||  |  ||   | |   |  ||       |  |   ||  ||   | |||| | | |      |||||  |||||||||||||||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| |||||  ||||  | || || || |  |||||||
ctgggtgaggtaaactttggggtgacttatttcttgatcca-tgactcttgctgatttcatacttaaaaatataggtgtgatatgtttc---tttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 5
---------gtatga-ttttgttactattcttcttaggataacttgccctttgttaggaatgatttattgatgtatcttaagcgt------gtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
          ||  |  ||||  |  | |  | |   |||   |  | |||  | | |    | |||   ||   | | |   ||      ||||  |||||||||||||||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| |||||  ||||  | || || || |  |||||||
gagttgaatttacaaactttgggatgacttatttcttgatccatgactcttgctgatgtcatacttaaatataggtgtgatatgttcctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGGTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGCCTTCTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 3
----------gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttat-tgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
          |  ||| ||  ||  |  ||   | |   |  ||       |  |   ||  ||   | |||| | | |      |||||  |||||||||||||||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| |||||  ||||  | || || || |  |||||||
gtaaactttggggtgacttatttcttgatcca-tgactcttgctgatttcatacttaaaaatataggtgtgatatgtttc---tttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
gtatgattt-tgttactattcttcttaggataacttgccctttgttag-----gaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
|||   ||| || |    |  |||||     |     ||  ||| |        | | | |||| | |||    |     | |||  |||||||| ||||||||||| ||||| || ||||| || |||||||| ||||| || ||||||||||| ||||| |||||  | || || ||||  |||||||
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
gtatgatttt--gttactattctt---------cttaggataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtt--tgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
||||| | ||  | | |||  |||         ||  | ||  ||      ||  ||   || || |||| |  | || | |   ||||    |||||| || ||||| ||||| |||||||| |  ||||| |||||||| ||||| |||||||||||||||||||| ||||| || || || ||   |||| |||
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcacct-tcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
gtatgattttg-ttactattcttct-taggataacttgccct--------ttgtt--aggaatgatttattgatgtatcttaagcgtgtt--tgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
||||| |||||  |   || ||||   ||   |   |  |||        ||| |  | || ||  |||||    | |  |     || |  |  ||||| ||||| |||||||| |||||||| |  ||||| || ||||||||||| |||||||||||||| |||||  ||||||| || || || |  ||  |||
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
---------------gtatgattttgt--tactattcttcttaggataacttgc----cctttgttag-gaatgatttattgatg-tatcttaagcgtgtt--tgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
               | |   ||   |  | |     ||| |    | || ||     | ||  | |  || ||  ||||   |  | |||||    || |  | |||||| ||||| || ||||| |||||||| |  ||||| || ||||||||||| |||||||||||||| |||||  ||||||| || || || |  ||  |||
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G09330.1 (Glycine max), 3'ss of exon 1
-------------gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttat-tgatgtatcttaagcgtgt----ttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
              |   |   |   | || |  | | |  ||   |||       ||   ||| ||| || |  |  |  ||||   | |     | | |||| || || || ||||| |||||||| |  || || |||||||| ||||| |||||||||||||||||||| || || || ||| | || || ||| |||
gtatgctctgtagatcaaaaccttcaaatacttgtttcaatatcttttgaggagcattgataattattgatcttgtcaactttaaaattatgctactaatagGAATTTAAAGGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTAACACCTGGCTGTGTTCATCTTTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 2
-----------------gtatgattttgttactattcttcttaggataacttgccctttgttaggaa-tgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
                   ||  | || |  || |   | ||   ||   |||       ||| ||| |||| |||| |  | | | |            ||||||| || || ||||| |||||||| |  || || |||||||| ||||| || || |||||||||||||| |||||||| || || || | |||| |||
gtatgctcgttagctggaaatcttattatatctgtgtctgttcctattttttgtggagcattaagaaatgatctattaacctctataactttgccactgaagGAGTTTAAAGGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 3
----------------------gtatgattttgttacta-ttcttcttaggataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
                       ||| || |   |   | || ||| ||   ||  | |  ||||  |   |||||| |||| |  ||| | |      |     ||||||| || || ||||| |||||||| |  || || |||||||| ||||| || |||||||||||||||||  ||||||| || || || | |||  |||
gtatgtttgttagctggaaatcttattatatcaatgtcagttgttcctattttaggtggagctttaatt--aatgatctattaacctatataactttgctactgaagGAGTTTAAAGGATATGTTTTCAAAATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
-------gtatgattttgttactat-tcttcttaggataacttgccc-tttgttaggaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
        | |  |  || | |  | | || ||  |||  ||||    ||   ||    | |   | |  ||| | ||  | |   ||  ||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| |||||||| || ||||| || || ||||| || ||||  ||| |||
gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G31700.2 (Arabidopsis thaliana), 3'ss of exon 1
---------gtatgattttgttactat--tcttcttag---gataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtttg--acagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
          |    |||| ||||| |  |||  | ||   ||  | | ||  || |      |||||    |  ||| | | ||  ||  ||    ||||||||||| || || || ||||| || | ||| || || || ||||||||||| |||||||||||||||||  |||| |||||||| || |  ||| |||
aggtacagattccatttttcttactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgttattgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 3
-------gtatgattttgttactat--tcttcttag---gataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtttg--acagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
        |    |||| ||||| |  |||  | ||   ||  | | ||  || |      |||||    |  ||| | | ||  ||  ||    ||||||||||| || || || ||||| || | ||| || || || ||||||||||| |||||||||||||||||  |||| |||||||| || |  ||| |||
gtacagattccatttttcttactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgttattgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 3'ss of exon 3
gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC---------
                                                             |   |  | | |   || |  | ||||||||||| || || ||||| || |||||||| ||||||||||| ||||| || ||||||||||| ||  ||||||  || || || ||||| |||          
------------------------------------------------------------gtcagtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaagCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825698|gb|FQ421797.1|FQ421797
EST:     GACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAG                         GAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
genomic: GACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAGgtatgatttt ... tgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
EST: gi|110406936|gb|EC972523.1|EC972523
EST:     TTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAG                         GAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
genomic: TTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAGgtatgatttt ... tgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
EST: gi|351027768|gb|FQ446935.1|FQ446935
EST:     TTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAG                         GAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
genomic: TTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAGgtatgatttt ... tgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
EST: gi|32269925|gb|CD719084.1|CD719084
EST:     TTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAG                         GAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
genomic: TTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAGgtatgatttt ... tgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
EST: gi|110732898|gb|EE108585.1|EE108585
EST:     TTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAG                         GAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT
genomic: TTTTTGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTGGGTGAGgtatgatttt ... tgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC
                          tattgat  putative branch site (score: 3)
                   aatgatttattgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgattttgttactattcttcttaggataacttgccctttgttaggaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC