Sequence
atgc intronic sequence ATGC exonic sequence...ttttagtatagttattttggtagtactgtgtttgaaccacagagatgtccaagtagaagtggttcttatctattatttattattttcttttggtttttagCCTTTAGCTCGAATGGGTGCTACTGTCACGGGAGTTGATGCTGTGGAGAAAAATATCAAGATTGCACGTCTTCATTCTGTATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0185g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g05900.1 (Oryza sativa), 3'ss of exon 3
-ttttagtatagttattttggtagtac-tgtgtttgaaccacagagatgtccaagtagaagtggttcttatctattatttattattttcttttggtttttagCCTTTAGCTCGAATGGGTGCTACTGTCACGGGAGTTGATGCTGTGGAGAAAAATATCAAGATTGCACGTCTTCATTCTGTATGA
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atgtcaatgtattctaagtgttgctgtgcatttgtgggctgtaacatatgctttgttctattgtttgattcactggactaattgcatgcttata--tggcagCCTCTTGCTCGGATGGGAGCTACAGTTACTGGAATTGATGCTGTTGACAAAAATATAAAGATTGCACGTGTCCATGCT------
upper sequence: Vv07s0185g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G03030.1 (Glycine max), 3'ss of exon 3
ttttagtatagttattttggtagtactgtgtttgaaccacagagatgtccaagtagaagtggttcttatctattatttattattttcttttggttttt-agCCTTTAGCTCGAATGGGTGCTACTGTCACGGGAGTTGATGCTGTGGAGAAAAATATCAAGATTGCACGTCTTCATTCTGTATGA
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-tatagagtattaagtttgttattgttttttattgcaaatttgtgctcttttttgttgttattttataatttatagccatgcttctctttttgttcttcagCCACTAGCTCGATTGGGAGCTACTGTGACGGGTGTTGATGCTGTAGAGAAGAATATCAAGATTGCTCAACTTCATGCT------
upper sequence: Vv07s0185g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G45780.1 (Glycine max), 3'ss of exon 3
ttttagtat--agttattttggtagtactgtgtttgaaccacagagatgtccaagtagaagtggttcttatctattatttattattttcttttggtttttagCCTTTAGCTCGAATGGGTGCTACTGTCACGGGAGTTGATGCTGTGGAGAAAAATATCAAGATTGCACGTCTTCATTCTGTATGA
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-tagagtattaagattgtttttttgttttttatttcaaatttgtgctcttttttgttgttatt-ttataatttacagccgtgcttctaattttgttcttcagCCACTAGCTCGATTGGGAGCTACTGTGACGGGTGTTGATGCTGTAGAGAAGAATATCAAGATTGCTCAACTTCATGCT------
upper sequence: Vv07s0185g00170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G30920.1 (Arabidopsis thaliana), 3'ss of exon 3
--ttttagtatagttattttggtagtactgtgtttgaaccacagagatgtccaagtagaagtggttcttatctattattta-ttattttcttttggtttttagCCTTTAGCTCGAATGGGTGCTACTGTCACGGGAGTTGATGCTGTGGAGAAAAATATCAAGATTGCACGTCTTCATTCTGTATGA
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cttgttggttgagcg--tttgagggttacacttggggttgacattgttgtt-agttataaagaatatttggtgagcggtagcttgttttttctttctttgaagCCTCTAGCACGGATGGGAGCAACTGTCACAGGAGTTGATGCTGTTGATAAGAATGTCAAAATTGCTCGTCTTCACGCT------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtccaagtagaagtggttcttatctattatttattattttcttttggtttttagCCTTTAGCTCGAATGGGTGCTACTGTCACGGGAGTTGATGCTGTGGAGAAAAATATCAAGATTGCACGTCTTCATTCTGTATGA
tttattattttctttt CT-rich tract
ttcttatctattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttagtatagttattttggtagtactgtgtttgaaccacagagatgtccaagtagaagtggttcttatctattatttattattttcttttggtttttagCCTTTAGCTCGAATGGGTGCTACTGTCACGGGAGTTGATGCTGTGGAGAAAAATATCAAGATTGCACGTCTTCATTCTGTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - aaccaca
- - - - - - - - - - - - - - - - - - - - - - - - ccaagta