Sequence
atgc intronic sequence ATGC exonic sequence...atggcacaagctctattctacttttctagatctcttctggctatcatatctgaaatgatgtatgaactgctattctcatcttattaaaaaatttctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAGGGGAGCCTGCAAGTGTGCACAAAGCTGTTGAACTAATTGCATCTAATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G15850.1 (Glycine max), 3'ss of exon 2
atggcacaagctctattctacttttctagatctcttctggctatcatatctgaaatgatgtatgaact-gctattct--catcttattaaaaaattt----ctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAGGGGAGCCTGCAAGTGTGCACAAAGCTGTTGAACTAATTGCATCTAATCT
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-----agtaatgcactgatattttgtaaacatatatttgagaatcatgattta--tgatatccaagtttgtgattatggtacctgaatgatatattttatacaacagAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTTCTGGGGTTCACAAGGCGGTTGAACTTGTTGCAATTCATCT
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G31670.2 (Glycine max), 3'ss of exon 3
-atggcacaagctctattctacttttctagatctcttctggctatcatatctg-aaatgatgtatgaactgctattctcatcttattaaaaaatttctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAGGGGAGCCTGCAAGTGTGCACAAAGCTGTTGAACTAATTGCATCTAATCT
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tacaataaaaactatttaccccattttgaattaaaactagtggactgttcttgtaaattttttattgtaccttaataatgtattattcatg--tttaaacagAAAACCTGCCAGTATTTGCTTTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTGCTGGTGTTCACAAGGCAGTTGAACTTATTGCAGTTCATTT
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G34470.1 (Glycine max), 3'ss of exon 3
-----atggcacaagctctattctacttttctagatctcttctggctatcatatctgaaatgatgtatgaactgctattctcatcttattaaaaaatttctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAGGGGAGCCTGCAAGTGTGCACAAAGCTGTTGAACTAATTGCATCTAATCT
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tatacaagaaaaacaatttaccctattttgaattaaaactactgg--actgttttgtaaattttaattgtgcc-caaataatgtattgtttatg--tttaaacagAAAACCTGCCAATATTTGCTTTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTGCTGGTGTTCACAAGGCAGTTGAACTTATTGCAGTTCATTT
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G03910.2 (Glycine max), 3'ss of exon 3
atggcacaagctctattctacttttc--tagatctct-tctggctatcatatctgaaatgatgtatgaact-gctattct--catcttattaaaaaattt----ctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAGGGGAGCCTGCAAGTGTGCACAAAGCTGTTGAACTAATTGCATCTAATCT
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--------agtaatgcactaatatttagtaaacatatatttgagaaacatgattta--tgatatccaagtttgtgattatggcacctgaatgatttattttatacaacagAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTTCTGGGGTTCACAAGGCGGTTGAACTTGTTGCAATTCATCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110400230|gb|EC966783.1|EC966783EST: CATAAAATCTATACAAGAAGCTTCTAATTGCATTGTTCGAGTTCTTGGAG AAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAG
genomic: CATAAAATCTATACAAGAAGCTTCTAATTGCATTGTTCGAGTTCTTGGAGgtgctgttct ... atttctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatctgaaatgatgtatgaactgctattctcatcttattaaaaaatttctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAGGGGAGCCTGCAAGTGTGCACAAAGCTGTTGAACTAATTGCATCTAATCT
tttctgc CT-rich tract
tattctcatcttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atggcacaagctctattctacttttctagatctcttctggctatcatatctgaaatgatgtatgaactgctattctcatcttattaaaaaatttctgcagAAAACCTGCCTCTTTTTGCTCTGCAAAATGATACTGTTGTTGAGATACAAGGGGAGCCTGCAAGTGTGCACAAAGCTGTTGAACTAATTGCATCTAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - cacaagc
- - - - - - - - - - - - - - - - - ttctggc
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaa