1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttagtagcttttgctgctggtactcttgagatttacattttctgatttttctattgatattaattgttatccttattaacttgttatttggcagtgcagAGGCTGATCCGCTTAACTCTTGAACATCCGCAATACCCATTAGATTATTCATTCCCATCCCATGAAGAG
species | Vitis vinifera |
transcript | Vv07s0129g01120.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGTTGAGGAATTCAAAACGAAGTCTCATGGAAAGGAGTCCCCCGAGCAG AGGCTGATCCGCTTAACTCTTGAACATCCGCAATACCCATTAGATTATTCAEST: gi|26261675|gb|CA812738.1|CA812738
genomic: TAGTTGAGGAATTCAAAACGAAGTCTCATGGAAAGGAGTCCCCCGAGCAGgtgtggctta ... ggcagtgcagAGGCTGATCCGCTTAACTCTTGAACATCCGCAATACCCATTAGATTATTCA
EST: TAGTTGAGGAATTCAAAACGAAGTCTCATGGAAAGGAGTCCCCCGAGCAG AGGCTGATCCGCTTAACTCTTGAACATCCGCAATACCCATTAGATTATTTA
genomic: TAGTTGAGGAATTCAAAACGAAGTCTCATGGAAAGGAGTCCCCCGAGCAGgtgtggctta ... ggcagtgcagAGGCTGATCCGCTTAACTCTTGAACATCCGCAATACCCATTAGATTATTCA
atttttctattgatattaattgttatccttattaacttgttatttggcagtgcagAGGCTGATCCGCTTAACTCTTGAACATCCGCAATACCCATTAGATTATTCATTCCCATCCCATGAAGAG
tattaac putative branch site (score: 1)
tattgatattaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtagcttttgctgctggtactcttgagatttacattttctgatttttctattgatattaattgttatccttattaacttgttatttggcagtgcagAGGCTGATCCGCTTAACTCTTGAACATCCGCAATACCCATTAGATTATTCATTCCCATCCCATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - -gctgctg