Sequence
atgc intronic sequence ATGC exonic sequencegtttggtttgaaatattttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 3
gtttggtttgaaatattttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT
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gtgtgtttcaaaat-tcttatcttctagatatgagatgtaatgcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcaacagTCCATATTACAATATTGATTTGAAGGAGATGCACGTTGCTGGGAAGCGACTGCCTCTAAACGCAAATGTTTTTGATGGAAAACATGGGACTGTCTTGGAT
upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G17990.1 (Glycine max), 3'ss of exon 3
gtttggtttgaaatattttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT
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gtgtgtttcaaaac-ttttatcttctagatatgagatgtaatgcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcgacagTCCATATTACAATATTGATTTGAAGGAGATACACGTTGCTGGGAAGCGACTGCCTCTAAACGCAAATGTTTTTGATGGAAAACATGGGACTGTCTTGGAT
upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 6
gtttggtttgaaatattttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT
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gtgtg-tgccaaatttcttatttcatagatatgagatgtcatgcattttcttaacaaatgcatttgattaatctcacacatttactctagtttcgggatggcgacagTCCATATTACAATATTGATTTGAAGGAGATACATGTTGCGGGGAAGCGACTGCATTTAAACCCAAAGGTTTTTGATGGAAAACATGGAACTGTCTTGGAT
upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G05490.1 (Glycine max), 3'ss of exon 3
gtttggtttgaaatattttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT
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gtgtg-tgtcaaatttcttattttatagatatgagatgtcatgcattttcttaacaaatgcatttgattaatctcacacatttactctagttttgggatggcgacagTCCATATTACAATATTGATTTGAAGGAGATACATGTTGCGGGGAAGCGACTGCATTTAAACCCAAAGGTTTTTGATGGGAAACATGGAACTGTCTTGGAT
upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 3
----gtttggtttgaaata-ttttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT
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gtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacagTCCATATTACAATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCTTTGACGGGGAACATGGCGCCGTACTAGAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT
ataaatttgatacata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttggtttgaaatattttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA