Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtaatatattttcattgtttaattacatatttcatccttaatcttgttcctttttggatgtagcagcgccagttcttattctttatctaatgctgcttttgtaaatgatgtccttgtgctatattatagttttatatatttcaataaataactttttgccatccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCT

Basic information

species Vitis vinifera
transcript Vv07s0104g01150.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G39300.1 (Glycine max), 3'ss of exon 3
gtgtaatatattttcattgtttaattacatatttcatccttaatcttgttcctttttggatgtagcagcgccagttcttattctttatctaatgctgcttttgtaaatgatgtccttgtgctatattatagttttatatatttcaataaataactttttgccatccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCT
                                    |    ||| || ||  | |||  ||| |  |       || | |     ||  |      || | ||  |    || | ||||||||||||   ||     ||   |  |||| ||  ||| ||   ||||||  ||||||| |||||||| ||  |||| |||||||| |||||||||||||||| |||| | ||| || | || || || |||||||||||||| || ||||||||| |
-----------------------------------gtataaaatgtttttattattta-atgaaaaatta----ttttcagctgataaatttcttagcatatgccagaattg-ctttgtgctatattgaggtc----atgccttgataagtagttttctgtggtccttga-atccagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTT

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G36650.1 (Glycine max), 3'ss of exon 3
gtgtaatatattttcattgtttaattacatatttcatccttaatcttgttcctttttggatgtagcagcgc-cagttcttattctttatctaatgctgcttttgtaaatgatgtccttgtgctatattatagttttatatatttcaataaataactttttgccatccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCT
                                    |    ||| || ||  | |||      |     |  ||| |  ||   ||  |       ||| | || ||    || | |||||||||||||  ||     ||   |  |||| |   ||||||    |||||  ||| ||| |||||||| ||  |||| |||||||| |||||||||||||||| |||| | ||| || | || || || |||||||||||||| || ||||||||| |
-----------------------------------gtataaaatgtttttattatttaatgaaaattttgttcagctgataaatttctt-------tgcatgtgcaagaattg-ctttgtgctatattaaggtc----atgccttgataagtgtttttttgtggcccttga-atctagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTT

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G03110.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgtaatatattttcattgtttaattacatatttcatccttaatcttgttcctttttggatgtagcagcgccagttcttattctttatctaatgctgcttttgtaaatgatgtccttgtgctatattatagttttatatatttcaataaataactttttgccat-ccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCT
                                                                                         ||| || | ||  ||     || ||       |  ||| |  | | ||  | |   ||  ||    | ||    |    ||| |||||||||| || || ||||||||||||||||| |||||||| |||||||||||||||   |||||||| || || || || || ||||| ||  |||| |||||
----------------------------------------------------------------------------------------gtaacgc-gattccgtgctctatttcacccattttcattgttttatcatcaact--gatggatgttgtattaatgtattctgcaatccagAGCATAAGCTATTTGTTGGTATGCTTCCAAAGAATGTCTCTGAAGCTGAAGTTCAATCTTTATTCTCCAAGTACGGGACCATAAAGGATCTACAGATTCT

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G03457.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgtaatatattttcattgtttaattacatatttcatccttaatcttgttcctttttggatgtagcagcgccagttcttattctttatctaatgctgcttttgtaaatgatgtccttgtgctatattatagttttatatatttcaataaataactttttgccatccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCT
                                   |  |  |||  |  |   |  || | ||   ||| |||       |||||| | |  | ||  ||    |  |      | | |  ||  || |  |   |   | ||  ||| ||   | ||  |  | | ||| ||||||||||||||||||| || ||||||||||| |||||||| |||||| |||||||    || ||||| ||| |||| ||||| || || ||  |||| |||||
---------------------------------gtacgcaaaatgcttctgagtgatgaa-gtctaagcaccaaaaga-gttctttttttctttct--ttccagagtttggtcgcattttttaatttttgataccaatcaatttgatagatg-ttcttgactgttcgtgcaatccagAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTAAGGATCTACAGATTCT

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G03457.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgtaatatattttcattgtttaattacatatttcatccttaatcttgttcctttttggatgtagcagcgccagttcttattctttatctaatgctgcttttgtaaatgatgtccttgtgctatattatagttttatatatttcaataaataactttttgccatccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCT
                                   |  |  |||  |  |   |  || | ||   ||| |||       |||||| | |  | ||  ||    |  |      | | |  ||  || |  |   |   | ||  ||| ||   | ||  |  | | ||| ||||||||||||||||||| || ||||||||||| |||||||| |||||| |||||||    || ||||| ||| ||||                           
---------------------------------gtacgcaaaatgcttctgagtgatgaa-gtctaagcaccaaaaga-gttctttttttctttct--ttccagagtttggtcgcattttttaatttttgataccaatcaatttgatagATG-TTCTTGACTGTTCGTGCAATCCAGAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATA---------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattatagttttatatatttcaataaataactttttgccatccttgctatccagAGCACAAACTTTTTGTTGGTATGCTTCCGAAGAATGTTTCTGAAGCTGAAGTTTCTTCTTTATTTTCTAAATATGGAACTATAAAAGACTTACAAATTCT
                         aaataac  putative branch site (score: 2)
                               ctttttgccatcctt  CT-rich tract
     atagttttatatattt  TA-rich tract