1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttcaaattcactcgagtggttggcaacttgttccctgttgtggatttatgacattatacagacatgataatttcttcataaaatggttgaattcaacagAGGGGGTGACTGGAAGAGTGGTGGTAGCTGTCACTTGGAGACGCTCCCTGACATGAGTTCTTCACCAGTTCCACCTGAAACATGGCCACAATTGGACAAT
species | Vitis vinifera |
transcript | Vv07s0104g00120.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAG AGGGGGTGACTGGAAGAGTGGTGGTAGCTGTCACTTGGAGACGCTCCCTGA
genomic: ATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAGgtttgcctta ... aattcaacagAGGGGGTGACTGGAAGAGTGGTGGTAGCTGTCACTTGGAGACGCTCCCTGA
tttatgacattatacagacatgataatttcttcataaaatggttgaattcaacagAGGGGGTGACTGGAAGAGTGGTGGTAGCTGTCACTTGGAGACGCTCCCTGACATGAGTTCTTCACCAGTTCCACCTGAAACATGGCCACAATTGGACAAT
atgataatttcttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaaattcactcgagtggttggcaacttgttccctgttgtggatttatgacattatacagacatgataatttcttcataaaatggttgaattcaacagAGGGGGTGACTGGAAGAGTGGTGGTAGCTGTCACTTGGAGACGCTCCCTGACATGAGTTCTTCACCAGTTCCACCTGAAACATGGCCACAATTGGACAAT
- - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatgg