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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaaatctagcatattagataattaatatttggtgcttctttatttcttaatgtgatgatgaatatgagtatatccacttttttaccactacatctagGTTTCTCGTTCTCTCGCTGCATGTGAAGGTGCTCTCCTGGTTGTAGATGCTTCTCAG

Basic information

species Vitis vinifera
transcript Vv07s0031g03050.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 3'ss of exon 3
gtatttaaa---tctagcatattagataattaatatttggtgcttctttatttcttaatgtgatgatgaatatgagtatatccacttttttaccactacatctagGTTTCTCGTTCTCTCGCTGCATGTGAAGGTGCTCTCCTGGTTGTAGATGCTTCTCAG
   || | |   ||| | ||  ||     ||| |||  |    ||||  || | |  |  |  ||||  | |  |  || |  | | | | ||  ||    ||||||||| |||||||| ||||| || || ||||| || ||||| || ||||||||||||
cctttcagagtgtcttggatgatactctgttattatcagcatgttctcaatatttggagtt--tgattgaaac-atcatgttaaatgtctgactgctta--ctagGTTTCCCGTTCTCTTGCTGCTTGCGAGGGTGCACTTCTGGTCGTTGATGCTTCTCAG

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G16700.1 (Glycine max), 3'ss of exon 3
gtatttaaatctagcatattagataattaatatttggtgcttctttatttcttaatgtgatgatgaatatg--agtatatccacttttttacca-ctacatctagGTTTCTCGTTCTCTCGCTGCATGTGAAGGTGCTCTCCTGGTTGTAGATGCTTCTCAG
      ||    |  || ||   |  ||  | || || ||   |  |   |    |  ||  || ||| |   | ||||      | | | ||| ||    | |||||||||| || |||||||||||||| |||||||| || || ||||| |||||||||
---accaagaacattatcttttttctttctttttaggggcagttaaacccccc--tcagaacatcaatttaataatataattgtgtctattccatctgtggccagGTTTCTCGGTCACTCGCTGCATGTGAGGGTGCTCTTCTAGTAGTAGACGCTTCTCAG

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 3
-gtatttaaatctagcatattagataattaatatttggtgcttctttatttcttaatgtgatgatgaatatgagtatatccacttttttaccactacatctagGTTTCTCGTTCTCTCGCTGCATGTGAAGGTGCTCTCCTGGTTGTAGATGCTTCTCAG
       ||    |  || ||   |  ||  | ||||| ||   |      |  |        ||  |||  | |||         | | |  ||    | |||||||||| || |||||||||||||| |||||||| || || || || |||||||||
ccccaccaagaacattatcttttttctttctt-tttggggcagttaagccccccagaacatcaat--ataataatatgattgtgactattcatctgtggccagGTTTCTCGGTCACTCGCTGCATGTGAGGGTGCTCTTCTAGTAGTGGACGCTTCTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46917805|gb|CN547134.1|CN547134
EST:     ATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAG                         GTTTCTCGTTCTCTCGCTGCATGGGAAG
genomic: ATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAGgtatttaaat ... ctacatctagGTTTCTCGTTCTCTCGCTGCATGTGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttaatgtgatgatgaatatgagtatatccacttttttaccactacatctagGTTTCTCGTTCTCTCGCTGCATGTGAAGGTGCTCTCCTGGTTGTAGATGCTTCTCAG
  tcttaat  putative branch site (score: 3)
                                 actttttta  TA-rich tract