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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttagtgaaaagattgtactaaaagcaacgtgcataatacttgatgtagtttcggggattgtctgagccactcatgtgctatcattattcatcttacagGGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCCAATCCCTCCACATACAAACTAGGGCAGTCAATTCAAACATGGCTCCAAC

Basic information

species Vitis vinifera
transcript Vv07s0031g02310.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51050468|gb|CO818567.1|CO818567
EST:     GCCTGAATTTTGGAGTGTAAACAAGAAATAGAACATGATCTCTTTGTTGG                         GGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCC
genomic: GCCTGAATTTTGGAGTGTAAACAAGAAATAGAACATGATCTCTTTGTTGGgtaagttaaa ... catcttacagGGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCC
EST: gi|349831099|gb|FQ420769.1|FQ420769
EST:     GCCTGAATTTTGGAGTGTAAACAAGAAATAGAACATGATCTCTTTGTTGG                         GGAAATCCAACTGGCAGCGGGGTAGATCGGAAGTAAGGTCTTATTGCTGCC
genomic: GCCTGAATTTTGGAGTGTAAACAAGAAATAGAACATGATCTCTTTGTTGGgtaagttaaa ... catcttacagGGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCC
EST: gi|352776607|gb|FQ474909.1|FQ474909
EST:     GCCTGAATTTTGGAGTGTAAACAAGAAATAGAACATGATCTCTTTGTTGG                         GGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCC
genomic: GCCTGAATTTTGGAGTGTAAACAAGAAATAGAACATGATCTCTTTGTTGGgtaagttaaa ... catcttacagGGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCC
EST: gi|110416770|gb|EC982774.1|EC982774
EST:     GCCTGAATTTTGGAGTGTAAACAAGAAATAGAACATGATCTCTTTGTTGG                         GGAAATCCAACTGGCAGCGGGGTAGATCGGAAGTAAGGTCTTATTGCTGCC
genomic: GCCTGAATTTTGGAGTGTAAACAAGAAATAGAACATGATCTCTTTGTTGGgtaagttaaa ... catcttacagGGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagtttcggggattgtctgagccactcatgtgctatcattattcatcttacagGGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCCAATCCCTCCACATACAAACTAGGGCAGTCAATTCAAACATGGCTCCAAC
                                           ttcatctt  CT-rich tract
                                   tatcattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcttagtgaaaagattgtactaaaagcaacgtgcataatacttgatgtagtttcggggattgtctgagccactcatgtgctatcattattcatcttacagGGAAATCCAACTGTCAGCGGGGTAGATCAGAAGTAAGGTCTTATTGCTGCCAATCCCTCCACATACAAACTAGGGCAGTCAATTCAAACATGGCTCCAAC

- - - -gaaaaga
- - - - - - - - - - - aaagcaa
- - - - - - - - - - - - - - - gtgcata
- - - - - - - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatc